Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG316_RS15845 Genome accession   NZ_CP108674
Coordinates   3593273..3595204 (+) Length   643 a.a.
NCBI ID   WP_326736074.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01022     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3588273..3600204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG316_RS15830 (OG316_15885) - 3589556..3589855 (+) 300 WP_326736071.1 YtxH domain-containing protein -
  OG316_RS15835 (OG316_15890) - 3589922..3591370 (+) 1449 WP_326736072.1 FGGY family carbohydrate kinase -
  OG316_RS15840 (OG316_15895) rcrP 3591540..3593273 (+) 1734 WP_326736073.1 ABC transporter ATP-binding protein Regulator
  OG316_RS15845 (OG316_15900) rcrQ 3593273..3595204 (+) 1932 WP_326736074.1 ABC transporter ATP-binding protein Regulator
  OG316_RS15850 (OG316_15905) - 3595248..3596387 (-) 1140 WP_326740597.1 RNA polymerase sigma factor -
  OG316_RS15855 (OG316_15910) dnaG 3596619..3598538 (-) 1920 WP_326736075.1 DNA primase -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69301.65 Da        Isoelectric Point: 5.1201

>NTDB_id=664901 OG316_RS15845 WP_326736074.1 3593273..3595204(+) (rcrQ) [Streptomyces sp. NBC_01022]
MAGPGGRMMAGGAPTERSMDFKGSSKRLLKRFAAEKATLYVMLVAVALSVALSVVGPKILGKATDLVFAGVVGRGMDAGT
TKEQAVEGLRRSNSGLADMLSKVDFTPGQGMDFDAIGHVLLVALAVYVGAGLLMLVSTRLSIRVINRVVFQLREDLQTKL
SRLPLSYFDRQKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLVMMFWISPLLALVALVTVPLSVVVAAKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQDESARDFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGIASAERIFELLDAEEQDADPAKGEAEFPGELRGSVSL
ENVSFRYDPEKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDIAKMSRDDLRSGIGMVLQD
TWLFGGTIAENIAYGASGDVTREQIEEAARAAHADRFIRTLPDGYDTRIDDEGSGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMAGLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLESKGAYARLYAAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=664901 OG316_RS15845 WP_326736074.1 3593273..3595204(+) (rcrQ) [Streptomyces sp. NBC_01022]
ATGGCCGGGCCTGGTGGACGCATGATGGCGGGCGGGGCGCCGACCGAGCGGTCCATGGACTTCAAGGGCTCGTCGAAGCG
GCTGCTGAAGCGCTTCGCGGCGGAGAAGGCCACCCTGTACGTGATGCTGGTGGCCGTCGCGCTGAGCGTGGCGCTCTCGG
TGGTCGGCCCGAAGATCCTCGGCAAGGCCACCGACCTGGTGTTCGCCGGTGTCGTCGGCCGCGGAATGGACGCGGGGACG
ACGAAGGAGCAGGCCGTCGAGGGCCTGCGCAGGAGCAACAGCGGTCTGGCCGACATGCTCTCCAAGGTGGACTTCACCCC
GGGGCAGGGCATGGACTTCGACGCGATCGGCCACGTGCTGCTCGTGGCGCTGGCCGTGTACGTCGGTGCCGGGCTGCTGA
TGCTGGTGTCGACGCGACTGTCGATCCGGGTGATCAACCGGGTCGTCTTCCAGCTGCGCGAGGACCTTCAGACGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCGGCAGAAGCGCGGCGAGGTGCTGAGCCGGGCGACGAACGACATCGACAACAT
CTCGCAGACGATGCAGCAGACGATGGGGCAGCTGATCAACTCGCTGCTGACCATCGTCGGCGTGCTCGTGATGATGTTCT
GGATCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGGTGGTCGTGGCGGCAAAGGTCGGCAAGCGC
TCCCAGCCGCAGTTCGTCCAGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGGCGGCAGGACGAGTCGGCGCGGGACTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCGGGT
TCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGATCGCTGTC
GTCGGCGGGCTGCGGGTCGCATCGGGCGCCCTGTCGATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTC
CATGCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCCGGGATCGCCTCGGCCGAGCGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGACGCCGACCCGGCGAAGGGCGAGGCCGAGTTCCCCGGGGAGCTGCGCGGCAGCGTGTCCCTG
GAGAACGTGTCGTTCCGCTACGACCCGGAGAAGCCGCTCATCGAGGACCTGTCGCTGAGCGTCGAGCCGGGCCACACGGT
CGCGATCGTCGGCCCGACCGGCGCCGGCAAGACGACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGACCGGGGGCC
GGATCGCTCTCGACGGGGTCGACATCGCGAAGATGTCGCGCGACGACCTGCGCTCGGGGATCGGCATGGTCCTCCAGGAC
ACCTGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCCTACGGTGCCTCGGGCGATGTCACCCGTGAGCAGATCGAGGA
GGCGGCGCGGGCGGCCCACGCCGACCGCTTCATCCGCACCCTGCCCGACGGCTACGACACACGCATCGACGACGAGGGAT
CGGGTGTCAGTGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATACTCGTGCTCGAC
GAGGCGACCAGCTCGGTGGACACCCGTACCGAGGTCCTGATCCAGAAGGCGATGGCCGGTCTCGCACACGGCCGTACGAG
CTTCGTGATCGCGCACCGGCTCTCCACCATCCGGGATGCCGACGTCATCCTGGTGATGGAGAACGGGTCGATCGTCGAGC
AGGGCACGCACGACGAGCTGCTGGAGTCCAAGGGCGCGTACGCCCGGCTGTATGCGGCCCAGTTCGCGCAGGCGGTCGCC
GAGGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(57-350)

ABC transporter (ABC_tran)

(415-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.423

97.045

0.383