Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG316_RS15840 Genome accession   NZ_CP108674
Coordinates   3591540..3593273 (+) Length   577 a.a.
NCBI ID   WP_326736073.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01022     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3586540..3598273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG316_RS15800 (OG316_15855) - 3586660..3587193 (+) 534 WP_326736068.1 DUF6357 family protein -
  OG316_RS15805 (OG316_15860) - 3587193..3587486 (+) 294 WP_326736069.1 hypothetical protein -
  OG316_RS15810 (OG316_15865) - 3587542..3588777 (-) 1236 WP_326736070.1 tyrosine-type recombinase/integrase -
  OG316_RS15830 (OG316_15885) - 3589556..3589855 (+) 300 WP_326736071.1 YtxH domain-containing protein -
  OG316_RS15835 (OG316_15890) - 3589922..3591370 (+) 1449 WP_326736072.1 FGGY family carbohydrate kinase -
  OG316_RS15840 (OG316_15895) rcrP 3591540..3593273 (+) 1734 WP_326736073.1 ABC transporter ATP-binding protein Regulator
  OG316_RS15845 (OG316_15900) rcrQ 3593273..3595204 (+) 1932 WP_326736074.1 ABC transporter ATP-binding protein Regulator
  OG316_RS15850 (OG316_15905) - 3595248..3596387 (-) 1140 WP_326740597.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62679.65 Da        Isoelectric Point: 5.0561

>NTDB_id=664900 OG316_RS15840 WP_326736073.1 3591540..3593273(+) (rcrP) [Streptomyces sp. NBC_01022]
MLIKLLRAYLGPYKKPIALLVVFQLLQTCATLYLPTLNADIIDNGVVQGDTGYIVQYGGVMIVVSIAQVVCNIGAVYIGA
RTASALGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPILGIAVSLIVRKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDDYEEERFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETESSVVP
PVNPVRELVAQGHLEVRGADFRYPGAEESVLRSVDLVARAGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDASDEELWHALEIAQAKEFVEGLEHGLDAPIAQGGTNVSGGQRQRL
SIARTLVQRPEIYLFDDSFSALDYATDAALRAALLRETRGATVVIVAQRVSTIRDADRILVLDEGRVVGSGSHHELMEGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=664900 OG316_RS15840 WP_326736073.1 3591540..3593273(+) (rcrP) [Streptomyces sp. NBC_01022]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGTCCGTACAAGAAACCGATCGCGCTGCTGGTCGTCTTCCAGCTGCTGCA
GACCTGCGCCACTCTCTATCTGCCCACCCTGAACGCGGACATCATTGACAACGGTGTCGTCCAGGGGGACACGGGCTACA
TCGTCCAGTACGGCGGCGTGATGATCGTCGTCAGCATCGCCCAGGTGGTCTGCAACATCGGGGCCGTCTACATCGGCGCC
CGCACCGCGTCCGCGCTCGGCCGTGACGTCCGGGCCTCGGTCTTCGACCGGGTGCAGTCGTTCTCCGCGCGCGAGGTCGG
CCGGTTCGGTGCGCCCTCGCTGATCACCCGTACGACCAATGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCCGCGGTG
CTGCTCGCGGTGGTGCCGATCCTCGGCATCGCGGTGAGCCTCATCGTGCGGAAGATGCGCCCGCTGTTCCGGACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTGCGCGACG
ACTACGAGGAGGAGCGCTTCCGGGGCGCCAACACCGAGCTGACGGACGTGGCACTGTCCACGGGCCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTCGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGGAGATCGGTGCGCTGACGGCGTTCCTGTCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGTGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGAAACCGAGTCCAGCGTGGTGCCC
CCGGTGAACCCGGTGCGGGAGCTCGTCGCCCAGGGGCATCTGGAGGTGCGCGGTGCGGACTTCCGCTACCCCGGTGCCGA
GGAGTCGGTGCTGCGCTCGGTGGACCTGGTGGCGCGGGCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGCCTCGTACCCCGGCTGTTCGATGTGACGGACGGCCAGGTGCTGGTCGACGGGACGGACGTACGG
ACCCTGGATCCGGTGCTGCTGGCGAAGACCGTGAGTCTGGTCCCGCAGAAGCCGTATCTCTTCTCCGGCACGGTCGCGAC
CAATCTGCGGTACGGGAATCCGGACGCGAGCGACGAGGAGCTGTGGCACGCGCTGGAGATCGCGCAGGCCAAGGAGTTCG
TCGAGGGTCTGGAGCACGGGCTCGACGCACCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGTCAGCGGCAGCGGCTC
TCGATCGCCCGGACGCTGGTGCAGAGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCCACGGA
TGCGGCGCTGCGCGCGGCGCTGCTGCGGGAGACCCGGGGGGCGACGGTGGTGATCGTCGCGCAGCGGGTGTCCACCATCC
GCGACGCCGACCGGATCCTGGTGCTGGACGAGGGCCGCGTCGTCGGTTCCGGCAGCCATCACGAGCTGATGGAAGGCAAT
GAGACATACCGGGAGATCGTTCTCTCGCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.252

94.107

0.388