Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG217_RS29305 Genome accession   NZ_CP108671
Coordinates   6511454..6512449 (-) Length   331 a.a.
NCBI ID   WP_328325498.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01023     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6506454..6517449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG217_RS29290 (OG217_29285) - 6507734..6508900 (+) 1167 WP_328325501.1 SWIM zinc finger family protein -
  OG217_RS29295 (OG217_29290) - 6509023..6509448 (+) 426 WP_328325500.1 hypothetical protein -
  OG217_RS29300 (OG217_29295) - 6509504..6511435 (-) 1932 WP_328325499.1 cellulase family glycosylhydrolase -
  OG217_RS29305 (OG217_29300) cytR 6511454..6512449 (-) 996 WP_328325498.1 LacI family DNA-binding transcriptional regulator Regulator
  OG217_RS29310 (OG217_29305) - 6512446..6513273 (-) 828 WP_328325497.1 carbohydrate ABC transporter permease -
  OG217_RS29315 (OG217_29310) - 6513298..6514224 (-) 927 WP_328325496.1 sugar ABC transporter permease -
  OG217_RS29320 (OG217_29315) - 6514237..6515529 (-) 1293 WP_328325495.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 35046.86 Da        Isoelectric Point: 7.9978

>NTDB_id=664862 OG217_RS29305 WP_328325498.1 6511454..6512449(-) (cytR) [Streptomyces sp. NBC_01023]
MSRGTAARPRPTIKDVAAQAGVSTAAVSKVFNNTGRISEPTRRRVLETAGRLGWSPSASASALRRARTRTVAMVVRRPTD
VLGTDLHFSELITGLESELSPRGYGLLLHLAGDVREETALYERLAAEGRVDGAVLTEHRADDPRPPLLERLGLPAVLLGS
AHGSGVSEAVRHLLDLGHRRIAYVTGPTGLLHTRFRQQVFEETLAGAGLAPVAVLHTDFTEAAATSATEQLLALDPRPTA
IVFANDSMAVCGIGTAQRAGLSVPAELSVVGYDNLPVGSWIHPRLTTVDQYVQQAGAAAARALLARCGEDVPPEPLTGQP
RLVVRESTGPV

Nucleotide


Download         Length: 996 bp        

>NTDB_id=664862 OG217_RS29305 WP_328325498.1 6511454..6512449(-) (cytR) [Streptomyces sp. NBC_01023]
GTGAGCCGGGGTACGGCGGCCCGCCCCCGGCCCACGATCAAGGACGTCGCCGCGCAGGCCGGGGTCTCCACGGCGGCCGT
GTCCAAGGTCTTCAACAACACCGGCCGGATCTCCGAGCCCACCCGGCGCCGCGTCCTGGAGACGGCCGGGCGGCTCGGCT
GGTCGCCGAGCGCGTCGGCGAGCGCGCTGCGCAGGGCCCGTACCCGCACGGTCGCGATGGTCGTACGCCGCCCCACCGAC
GTCCTCGGCACCGATCTGCACTTCTCCGAGCTGATCACCGGTCTGGAGAGCGAACTGTCGCCGCGCGGGTACGGGCTGCT
GCTGCATCTGGCCGGCGATGTGCGCGAGGAGACCGCTCTGTACGAGCGGCTCGCCGCCGAGGGCCGGGTCGACGGGGCCG
TGCTGACGGAGCACCGGGCCGACGACCCGCGGCCGCCGCTGCTGGAACGGCTCGGGCTGCCCGCGGTCCTGCTGGGCTCG
GCGCACGGCAGCGGGGTCAGCGAGGCGGTCCGCCATCTGCTGGACCTGGGGCACCGGCGCATCGCCTATGTGACCGGGCC
GACCGGGCTGCTCCACACCCGCTTCCGGCAGCAGGTCTTCGAGGAGACCCTGGCCGGGGCGGGCCTGGCCCCCGTCGCGG
TGCTCCACACGGACTTCACCGAAGCGGCGGCCACTTCCGCCACCGAGCAGCTGCTCGCCCTGGATCCGCGGCCCACCGCC
ATCGTCTTCGCCAATGACTCGATGGCGGTGTGCGGCATCGGCACGGCGCAGCGCGCGGGGCTCTCCGTGCCCGCGGAACT
GTCCGTCGTCGGCTACGACAACCTGCCGGTCGGCAGCTGGATCCACCCCCGGCTGACCACGGTCGACCAGTACGTCCAGC
AGGCCGGCGCGGCTGCCGCCCGGGCGCTGCTCGCGCGGTGCGGCGAGGACGTACCCCCTGAACCCCTCACCGGACAACCC
CGGCTCGTCGTACGCGAGTCGACCGGTCCCGTCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-328)

Bacterial regulatory proteins, lacI family (LacI)

(12-57)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.905

100

0.366