Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG217_RS25345 Genome accession   NZ_CP108671
Coordinates   5598509..5599525 (+) Length   338 a.a.
NCBI ID   WP_371538199.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01023     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5593509..5604525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG217_RS25320 (OG217_25340) - 5593611..5594561 (+) 951 WP_371538193.1 Scr1 family TA system antitoxin-like transcriptional regulator -
  OG217_RS25325 (OG217_25345) - 5594518..5594649 (+) 132 WP_328326749.1 DUF397 domain-containing protein -
  OG217_RS25330 (OG217_25350) - 5594652..5596058 (-) 1407 WP_371538196.1 MFS transporter -
  OG217_RS25335 (OG217_25355) - 5596124..5596855 (+) 732 WP_328326745.1 metalloregulator ArsR/SmtB family transcription factor -
  OG217_RS25340 (OG217_25360) - 5597039..5598400 (+) 1362 WP_328326743.1 MFS transporter -
  OG217_RS25345 (OG217_25365) cytR 5598509..5599525 (+) 1017 WP_371538199.1 LacI family DNA-binding transcriptional regulator Regulator
  OG217_RS25350 (OG217_25370) - 5599830..5601026 (+) 1197 WP_371538201.1 hypothetical protein -
  OG217_RS25355 (OG217_25375) - 5601013..5602698 (+) 1686 WP_371538204.1 class I adenylate-forming enzyme family protein -
  OG217_RS25360 (OG217_25380) - 5602702..5603868 (+) 1167 WP_371538207.1 CaiB/BaiF CoA transferase family protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 35321.48 Da        Isoelectric Point: 9.2494

>NTDB_id=664855 OG217_RS25345 WP_371538199.1 5598509..5599525(+) (cytR) [Streptomyces sp. NBC_01023]
MATLVDVAKRAGVSVGVVSRLLNGDETLRVRDETKRRVREAAAELEYTPNYAARALRKAKVGVIGLAVHDASNPVYSEII
AGAQAEATKAGYALMLSDVDALATDDVMFKRVVSSGAIDGLLLQRAGTASDALVSKIASGQVPTVLLNDRTRGAIGSVAV
DDYTAAHMAVSHLIGLGHRRIGLLQVDGPQSRALRRRKGWADALTAAGLDAPRAGVFPGGHTAEQGYRGMTDLLSARKPP
TAVFAANVLSAVGALSAANDLGVSVPDDVSLVGLHDVFVANFLQPRLTVVRLPLFELGARAVTLLLKQLQNEPAQHESIE
DPAPVMVIRASTAPPAAG

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=664855 OG217_RS25345 WP_371538199.1 5598509..5599525(+) (cytR) [Streptomyces sp. NBC_01023]
ATGGCCACTCTGGTCGACGTAGCGAAGCGGGCCGGCGTATCGGTCGGCGTTGTGTCCCGACTGCTGAACGGTGACGAGAC
TCTCCGCGTACGGGACGAGACCAAGCGCCGGGTCAGAGAAGCTGCGGCCGAACTGGAATACACGCCGAACTACGCCGCCA
GGGCGCTGCGCAAGGCCAAGGTCGGTGTGATCGGCCTGGCGGTGCACGACGCGAGCAACCCCGTCTACAGCGAGATCATC
GCGGGCGCCCAGGCCGAGGCGACGAAGGCCGGTTACGCCCTCATGCTGTCGGACGTGGACGCTCTCGCCACGGACGACGT
GATGTTCAAGCGCGTCGTCTCCAGCGGTGCGATCGACGGGCTGCTCCTCCAGCGGGCCGGTACCGCGTCCGACGCACTGG
TGTCGAAGATCGCCTCCGGGCAGGTGCCGACCGTACTGCTCAACGACCGCACCCGGGGGGCCATCGGCAGTGTGGCCGTC
GACGACTACACGGCGGCGCACATGGCCGTCTCGCACCTGATCGGCCTCGGTCACCGGCGGATCGGACTGCTCCAGGTCGA
CGGCCCCCAGAGCCGTGCGCTCCGCAGGCGCAAGGGCTGGGCCGACGCTCTCACCGCCGCCGGGCTCGACGCACCGCGCG
CCGGTGTCTTCCCCGGCGGCCACACCGCCGAACAGGGTTACCGCGGTATGACCGACCTGCTCTCCGCGCGGAAGCCGCCG
ACCGCGGTGTTCGCCGCCAACGTGCTCTCCGCGGTCGGCGCTCTCAGCGCCGCCAACGACCTGGGCGTCTCCGTACCGGA
CGACGTCTCGCTGGTCGGCCTCCATGACGTCTTCGTCGCGAATTTCCTCCAGCCCCGGCTCACTGTGGTCCGGCTGCCGC
TGTTCGAGCTCGGCGCCAGAGCGGTCACGCTTCTCCTCAAGCAGCTGCAGAACGAACCGGCCCAGCACGAGAGCATCGAG
GACCCGGCGCCCGTCATGGTGATCCGTGCCTCCACCGCCCCGCCCGCAGCGGGCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-332)

Bacterial regulatory proteins, lacI family (LacI)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.86

100

0.364