Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG217_RS09990 Genome accession   NZ_CP108671
Coordinates   2235022..2236242 (-) Length   406 a.a.
NCBI ID   WP_328331889.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01023     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2230022..2241242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG217_RS09970 (OG217_09985) - 2230264..2230602 (-) 339 WP_327295004.1 P-II family nitrogen regulator -
  OG217_RS09975 (OG217_09990) - 2230599..2231987 (-) 1389 WP_328331895.1 ammonium transporter -
  OG217_RS09980 (OG217_09995) - 2232335..2233810 (-) 1476 WP_371535122.1 hypothetical protein -
  OG217_RS09985 (OG217_10000) - 2234239..2234895 (+) 657 WP_328331891.1 bifunctional DNA primase/polymerase -
  OG217_RS09990 (OG217_10005) pilA 2235022..2236242 (-) 1221 WP_328331889.1 signal recognition particle-docking protein FtsY Machinery gene
  OG217_RS09995 (OG217_10010) - 2236435..2237910 (+) 1476 WP_328331887.1 cytosine permease -
  OG217_RS10000 (OG217_10015) - 2237972..2238952 (+) 981 WP_328331885.1 LLM class flavin-dependent oxidoreductase -
  OG217_RS10005 (OG217_10020) - 2238986..2240404 (-) 1419 WP_328331883.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 42764.96 Da        Isoelectric Point: 4.4722

>NTDB_id=664823 OG217_RS09990 WP_328331889.1 2235022..2236242(-) (pilA) [Streptomyces sp. NBC_01023]
MEIVILAVVIALVAVGAISGLVVSSRKKKQLPTAPPSAPTITAPPAEPQVGEDAAPPRDESRRTIEEVDLPPADEAVGAP
AAVEDPVVAEPVAPRIEIPEPTEGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEETWEEIEDTLLTADVGVAPTQELVE
RLRERVRVLGTRTPQELRTLLREELLNLLGTDFDREVKTEGGLETPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLG
AADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIKEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKH
GPLDEVLLVLDATTGQNGLVQARVFAEVVAITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGPDDLAPFEPEAFV
DALVGE

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=664823 OG217_RS09990 WP_328331889.1 2235022..2236242(-) (pilA) [Streptomyces sp. NBC_01023]
ATGGAAATCGTGATCCTTGCTGTAGTCATCGCCCTGGTCGCTGTCGGCGCGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCCACGGCACCGCCGAGTGCGCCGACCATCACAGCGCCGCCCGCCGAACCCCAGGTCGGCGAGGACG
CTGCCCCACCGCGCGACGAGTCGCGCCGCACCATCGAGGAGGTGGACCTCCCGCCCGCCGACGAGGCCGTGGGCGCCCCC
GCCGCCGTCGAGGACCCGGTCGTCGCGGAGCCCGTCGCCCCGCGGATCGAGATCCCGGAACCGACCGAGGGCCGTCTCGT
ACGGCTGCGTGCCCGGCTCGCCCGCTCGCAGAACTCGCTGGGCAAGGGACTGCTCACCCTGCTCTCCCGCGACAACCTCG
ACGAGGAGACCTGGGAGGAGATCGAGGACACCCTGCTCACCGCCGACGTCGGCGTCGCGCCGACCCAGGAGCTGGTCGAG
CGGCTGCGTGAGCGGGTCAGGGTCCTCGGTACCCGTACACCGCAGGAGCTGCGCACCCTGCTGCGCGAGGAACTGCTGAA
CCTGCTCGGTACGGACTTCGACCGCGAGGTCAAGACCGAGGGCGGCCTGGAGACTCCGGGCGTCGTCATGGTCGTCGGGG
TCAACGGTACCGGGAAGACCACCACCACCGGAAAGCTCGCCCGGGTCCTGGTGGCCGACGGCCGCAGCGTGGTCCTCGGC
GCGGCCGACACCTTCCGGGCCGCCGCCGCCGACCAGCTCCAGACCTGGGGCGAACGGGTCGGCGCGCGCACCGTGCGCGG
CCCCGAGGGCGGCGACCCGGCGTCGATCGCCTTCGACGCGGTGAAGGAGGGCATCAAGGAGGGCGCCGATGTCGTCCTCA
TCGACACCGCCGGACGGCTGCACACCAAGACCGGCCTGATGGACGAGCTCGGCAAGGTCAAGCGGGTCGTGGAGAAGCAC
GGTCCGCTGGACGAGGTGCTGCTCGTACTGGACGCGACGACCGGGCAGAACGGCCTGGTGCAGGCGCGGGTGTTCGCCGA
GGTGGTGGCCATCACCGGCATCGTGCTGACCAAGCTGGACGGTACGGCCAAGGGCGGCATCGTGATCGCTGTCCAGCGTG
AACTGGGCGTACCGGTCAAGCTGGTCGGCCTCGGCGAGGGCCCGGACGACCTGGCCCCGTTCGAGCCCGAGGCGTTCGTG
GACGCGCTGGTCGGGGAGTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(207-404)

SRP54-type protein, helical bundle domain (SRP54_N)

(120-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.192

89.901

0.379