Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG217_RS08970 Genome accession   NZ_CP108671
Coordinates   2002059..2002853 (+) Length   264 a.a.
NCBI ID   WP_328332235.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01023     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1997059..2007853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG217_RS08950 (OG217_08970) - 1997084..1997689 (-) 606 WP_328332242.1 YdbC family protein -
  OG217_RS08955 (OG217_08975) - 1998006..2000396 (-) 2391 Protein_1787 vitamin B12-dependent ribonucleotide reductase -
  OG217_RS08960 - 2000500..2001039 (-) 540 Protein_1788 hypothetical protein -
  OG217_RS08965 (OG217_08985) nrdR 2000985..2001497 (-) 513 WP_328332238.1 transcriptional regulator NrdR -
  OG217_RS08970 (OG217_08990) dinR/lexA 2002059..2002853 (+) 795 WP_328332235.1 transcriptional repressor LexA Regulator
  OG217_RS08975 (OG217_08995) - 2003026..2004996 (-) 1971 WP_328332233.1 ATP-dependent DNA helicase -
  OG217_RS08980 (OG217_09000) - 2005035..2006840 (-) 1806 WP_328332231.1 IucA/IucC family siderophore biosynthesis protein -
  OG217_RS08985 (OG217_09005) - 2007105..2007845 (-) 741 WP_328332229.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28589.40 Da        Isoelectric Point: 7.4240

>NTDB_id=664819 OG217_RS08970 WP_328332235.1 2002059..2002853(+) (dinR/lexA) [Streptomyces sp. NBC_01023]
MTTTADTATITAQDRSQNRLEPVHAMNDAATGPEGQLPPRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQTTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHN
AAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=664819 OG217_RS08970 WP_328332235.1 2002059..2002853(+) (dinR/lexA) [Streptomyces sp. NBC_01023]
GTGACCACGACCGCAGACACCGCGACCATCACCGCCCAGGACCGTTCGCAGAACCGACTCGAGCCGGTGCATGCCATGAA
TGACGCAGCAACGGGCCCCGAAGGCCAGCTGCCCCCGCGACCCGCACGCTCGCTGCCCGGACGGCCTCCCGGTATCCGGG
CGGACAGCTCCGGACTCACGGACCGGCAGCGGCGGGTGATCGAGGTGATCAGGGACTCCGTGCAGCGCCGTGGATACCCG
CCCTCCATGCGCGAGATCGGTCAGGCGGTGGGGCTGTCCAGCACCTCGTCCGTCGCCCACCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTGCGCCGCGACCCGCACCGCCCCCGGGCGTACGAGGTCAGGGGCTCCGACCAGCCGAGCACCCAGACCA
CCGACACCACGGGCAAGCCCGCCGCGTCGTACGTCCCGCTGGTCGGCCGGATCGCCGCCGGTGGGCCGATCCTGGCTGAG
GAGTCGGTCGAGGACGTCTTCCCGCTCCCCCGGCAGCTGGTCGGTGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGCGA
CTCGATGATCGAGGCCGCGATCTGTGACGGCGACTGGGTCACGGTGCGGCGCCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCAGCCATGCTGGAGGGCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGGCATGTGTGGCTGCTGCCGCACAAT
GCCGCCTACCAGCCGATCCCGGGTGACGAAGCCACGATCCTCGGCAAGGTAGTGGCTGTACTCCGACGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371