Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG217_RS04295 Genome accession   NZ_CP108671
Coordinates   968386..969420 (+) Length   344 a.a.
NCBI ID   WP_328333763.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01023     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 963386..974420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG217_RS04285 (OG217_04305) - 964831..966468 (-) 1638 WP_328333767.1 ABC-F family ATP-binding cassette domain-containing protein -
  OG217_RS04290 (OG217_04310) - 966707..968194 (+) 1488 WP_371534734.1 M1 family metallopeptidase -
  OG217_RS04295 (OG217_04315) cytR 968386..969420 (+) 1035 WP_328333763.1 LacI family DNA-binding transcriptional regulator Regulator
  OG217_RS04300 (OG217_04320) - 969383..970300 (-) 918 WP_371534735.1 oxygenase MpaB family protein -
  OG217_RS04305 (OG217_04325) - 970602..971363 (+) 762 WP_328333759.1 MerR family transcriptional regulator -
  OG217_RS04310 (OG217_04330) - 971386..973557 (-) 2172 WP_371534737.1 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36770.77 Da        Isoelectric Point: 6.4299

>NTDB_id=664808 OG217_RS04295 WP_328333763.1 968386..969420(+) (cytR) [Streptomyces sp. NBC_01023]
MPDPIHGSRPTLEAVAARAGVSRATASRVVNGGAGVRQPLVDRVQQAVEELGYVPNHAARTLVTRRNGAVAVIIAEPEIR
IFSDPFFSQQLRGISRELTAHDSQLVLLLVEGRKDYDRIGRYLAGGHVDGALAFSLHTEDPLPAVIHRAGIPTVFGGRPV
WAGPESGLALPYADCDNRGGARTAVQHLVSLGRRHIAHIAGPQDQTSGIDRLDGYRDVLQDVDPGLTAQGAFTAESGAAA
MSGLLERRPEVDAVFAANDLMASGALQVLREHGRRVPHDVAVVGFDDMEKVAECTDPPLTTVRQDIEGMGRLMVRMLLRL
LDGESVTPPDSVIMPTGLVRRASA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=664808 OG217_RS04295 WP_328333763.1 968386..969420(+) (cytR) [Streptomyces sp. NBC_01023]
TTGCCCGATCCGATCCACGGCTCCCGGCCGACTCTGGAGGCCGTCGCGGCCCGCGCGGGCGTGTCGCGGGCGACGGCCTC
GCGCGTCGTCAACGGCGGCGCCGGTGTGCGGCAGCCGCTGGTGGACCGAGTCCAGCAGGCTGTCGAGGAGCTCGGCTACG
TACCGAATCACGCGGCCAGGACGCTTGTCACCCGGCGCAACGGCGCGGTCGCGGTCATCATCGCCGAGCCGGAGATCCGG
ATCTTCTCGGACCCGTTCTTCTCCCAGCAGCTGCGCGGTATCAGCCGCGAACTGACCGCGCATGACTCGCAGTTGGTGCT
GCTGCTGGTGGAGGGCAGGAAGGACTACGACCGGATCGGCCGCTATCTGGCGGGCGGCCATGTCGACGGTGCGCTGGCCT
TCTCCCTGCACACCGAGGATCCGCTGCCCGCGGTGATCCACCGGGCCGGCATCCCCACGGTCTTCGGCGGCCGGCCGGTG
TGGGCGGGCCCGGAGTCCGGTCTCGCCCTGCCCTACGCCGACTGCGACAACCGGGGCGGCGCCCGCACGGCGGTCCAGCA
TCTGGTCTCGCTCGGACGCCGGCACATCGCGCACATCGCGGGCCCGCAGGACCAGACATCGGGGATCGACCGGCTGGACG
GTTACCGGGATGTGCTGCAGGACGTCGACCCCGGGCTCACCGCGCAGGGGGCCTTCACGGCGGAGAGCGGCGCCGCCGCG
ATGTCCGGACTCCTTGAGCGGCGGCCCGAAGTGGACGCGGTGTTCGCGGCCAACGACCTGATGGCATCAGGGGCGCTCCA
GGTGCTGCGGGAACACGGCAGGCGGGTCCCCCACGACGTGGCGGTGGTGGGGTTCGACGACATGGAGAAGGTCGCGGAGT
GCACCGACCCGCCGCTGACGACGGTCCGTCAGGACATCGAGGGCATGGGGCGGTTGATGGTACGGATGCTGCTCCGCCTC
CTGGACGGGGAGAGCGTCACACCGCCGGATTCCGTGATCATGCCGACCGGCCTGGTGCGCCGGGCCTCCGCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(185-343)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.657

99.128

0.363