Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MO416_RS15965 Genome accession   NZ_CP093458
Coordinates   3263783..3264379 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain VA684     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3248017..3266660 3263783..3264379 within 0


Gene organization within MGE regions


Location: 3248017..3266660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MO416_RS15940 (MO416_15925) - 3257953..3258366 (-) 414 WP_004144085.1 CoA-binding protein -
  MO416_RS15945 (MO416_15930) mgsA 3258521..3258979 (+) 459 WP_002898432.1 methylglyoxal synthase -
  MO416_RS15950 (MO416_15935) helD 3258991..3261045 (-) 2055 WP_075394721.1 DNA helicase IV -
  MO416_RS15955 (MO416_15940) - 3261170..3261616 (+) 447 WP_002898425.1 YccF domain-containing protein -
  MO416_RS15960 (MO416_15945) yccS 3261634..3263769 (+) 2136 WP_002898422.1 YccS family putative transporter -
  MO416_RS15965 (MO416_15950) sxy/tfoX 3263783..3264379 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  MO416_RS15970 (MO416_15955) sulA 3264728..3265237 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  MO416_RS15975 (MO416_15960) ompA 3265590..3266660 (+) 1071 WP_002898408.1 porin OmpA -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=664801 MO416_RS15965 WP_004179217.1 3263783..3264379(-) (sxy/tfoX) [Klebsiella pneumoniae strain VA684]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=664801 MO416_RS15965 WP_004179217.1 3263783..3264379(-) (sxy/tfoX) [Klebsiella pneumoniae strain VA684]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51