Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG462_RS30865 Genome accession   NZ_CP108669
Coordinates   6788248..6789462 (+) Length   404 a.a.
NCBI ID   WP_406062589.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01077     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6783248..6794462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG462_RS30850 (OG462_30830) - 6784194..6785627 (+) 1434 WP_406062585.1 sugar porter family MFS transporter -
  OG462_RS30855 (OG462_30835) - 6785676..6786647 (-) 972 WP_406062586.1 LLM class flavin-dependent oxidoreductase -
  OG462_RS30860 (OG462_30840) - 6786705..6788162 (-) 1458 WP_406062588.1 cytosine permease -
  OG462_RS30865 (OG462_30845) pilA 6788248..6789462 (+) 1215 WP_406062589.1 signal recognition particle-docking protein FtsY Machinery gene
  OG462_RS30870 (OG462_30850) - 6789528..6790181 (-) 654 WP_406062591.1 bifunctional DNA primase/polymerase -
  OG462_RS30875 (OG462_30855) - 6790608..6792083 (+) 1476 WP_406066796.1 hypothetical protein -
  OG462_RS30880 (OG462_30860) - 6792547..6793893 (+) 1347 WP_406062593.1 ammonium transporter -
  OG462_RS30885 (OG462_30865) - 6793890..6794228 (+) 339 WP_015036464.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 42557.64 Da        Isoelectric Point: 4.4338

>NTDB_id=664773 OG462_RS30865 WP_406062589.1 6788248..6789462(+) (pilA) [Streptomyces sp. NBC_01077]
MELILAVVIALVVAVAVTSGLVISGRKKKQLPPAEPPSTTPTITAPPAEPHVGEEAETPREEPRRTVEEVELPAEAAPEA
PVAEEPEAPAAPEIEIPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLTADVGVAPTQELVERL
RERVRVLGTRTPEELRTLLREELVALLGPDLDRTVHTESPSDVPGVVMVVGVNGTGKTTTTGKLARVLVADGKSVVLGAA
DTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGP
LDEILLVLDATTGQNGLIQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPFEPGAFVDA
LIGD

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=664773 OG462_RS30865 WP_406062589.1 6788248..6789462(+) (pilA) [Streptomyces sp. NBC_01077]
ATGGAACTCATCCTTGCTGTAGTCATCGCTCTGGTCGTCGCGGTCGCCGTGACGAGCGGGCTCGTGATCAGCGGCCGCAA
GAAGAAGCAGCTGCCGCCGGCCGAGCCGCCGTCCACCACGCCGACCATCACCGCTCCGCCCGCCGAACCGCATGTCGGCG
AGGAGGCGGAGACGCCGCGGGAGGAACCACGCCGCACGGTCGAGGAGGTCGAACTCCCCGCCGAGGCGGCCCCCGAGGCC
CCGGTCGCCGAGGAGCCCGAGGCCCCCGCGGCCCCCGAGATCGAGATCCCGGAACCCACCGCGGGCCGTCTCGTACGGCT
CAGGGCCCGCCTCGCCCGCTCGCAGAACTCGCTCGGCAAGGGGCTGCTCACGCTCCTGTCCCGCGAGCACCTCGACGAGG
ACACCTGGGAGGAGATCGAGGAGACCCTTCTCACGGCCGATGTCGGCGTCGCTCCCACCCAGGAGCTCGTCGAGCGGCTG
CGCGAGCGGGTCCGGGTGCTCGGCACCCGCACCCCGGAGGAGCTGCGCACTCTGCTCCGCGAGGAGCTCGTCGCCCTCCT
CGGCCCCGACCTCGACCGCACGGTGCACACCGAGAGCCCCTCGGACGTCCCGGGCGTGGTCATGGTCGTCGGCGTCAACG
GCACCGGCAAGACCACCACCACCGGCAAGCTGGCCCGCGTCCTCGTCGCCGACGGCAAGTCCGTCGTCCTCGGCGCGGCC
GACACCTTCCGTGCCGCCGCCGCCGACCAGCTCCAGACCTGGGGCGAGCGCGTCGGCGCCAGGACCGTCCGCGGTCCGGA
GGGCGGCGACCCCGCGTCGATCGCCTTCGACGCGGTCAAGGAGGGCATCGCTGAGGGCGCCGACGTCGTCCTCATCGACA
CCGCCGGCCGGCTCCACACCAAGACCGGCCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTCGAGAAGCACGGCCCG
CTCGACGAGATCCTGCTCGTCCTCGACGCGACCACCGGCCAGAACGGCCTGATCCAGGCCCGCGTGTTCGCCGAGGTCGT
CGACATCACCGGCATCGTGCTCACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCGTCGCCGTCCAGCGCGAGCTGG
GCGTCCCGGTCAAGCTCGTCGGCCTGGGCGAGGGCCCGGACGACCTGGCTCCCTTCGAGCCGGGCGCCTTCGTCGACGCC
CTGATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(205-402)

SRP54-type protein, helical bundle domain (SRP54_N)

(118-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

44.602

87.129

0.389