Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG462_RS19295 Genome accession   NZ_CP108669
Coordinates   4338004..4339005 (-) Length   333 a.a.
NCBI ID   WP_406059153.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01077     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4333004..4344005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG462_RS19280 - 4333683..4335056 (+) 1374 WP_406059149.1 hypothetical protein -
  OG462_RS19285 (OG462_19265) - 4335297..4336832 (-) 1536 WP_406059151.1 MFS transporter -
  OG462_RS19290 (OG462_19270) - 4336895..4337854 (+) 960 WP_406066612.1 helix-turn-helix transcriptional regulator -
  OG462_RS19295 (OG462_19275) rpoS 4338004..4339005 (-) 1002 WP_406059153.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OG462_RS19300 (OG462_19280) - 4339490..4340536 (+) 1047 WP_406059155.1 questin oxidase family protein -
  OG462_RS19305 (OG462_19285) - 4340603..4341391 (-) 789 WP_406059157.1 dioxygenase -
  OG462_RS19310 (OG462_19290) - 4341533..4342021 (+) 489 WP_406059159.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG462_RS19315 (OG462_19295) - 4342069..4343598 (-) 1530 WP_406059161.1 MFS transporter -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37331.14 Da        Isoelectric Point: 5.1404

>NTDB_id=664745 OG462_RS19295 WP_406059153.1 4338004..4339005(-) (rpoS) [Streptomyces sp. NBC_01077]
MATRAVARRQTSAKSGAARASSVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYARQILDGEVESEAG
GASREELEALYEAGERAKDLFIKSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPTEIAAELDTKPERVVDVLDWARDPVSLNMSVDDQGETQ
FGDLLEDTSAVSPEQSVLTLLRSEELDDLIDKLDHRTASIIRMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLEL
KKMAHDTGFDAVA

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=664745 OG462_RS19295 WP_406059153.1 4338004..4339005(-) (rpoS) [Streptomyces sp. NBC_01077]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGACCTCCGCCAAGAGCGGGGCCGCACGGGCCAGCAGCGTTCGCGCCGTGGG
CGGGGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACACCCCTGCTCGACGCCGCCAAGG
AGGTCGAGCTCTCCCAGACGATCGAGGCCGGGGTGTACGCCCGGCAGATACTCGACGGAGAGGTGGAGTCCGAGGCCGGC
GGCGCGTCCCGCGAGGAGCTCGAAGCGCTCTACGAGGCGGGCGAGCGTGCCAAGGACCTCTTCATCAAGTCCAACCTGCG
GCTCGTGGTGGCCGTCGCCCGGCGCTACCCGCGCAGTGGACTGCCGCTGCTCGACCTGATCCAGGAAGGGAACGCGGGCC
TGGTGCGCGCGGTCGAGAAGTTCGACTACGCGAAGGGCTTCAAGTTCTCCACGTACGCGACGTGGTGGATCCGCCAGGCC
ATCACCCGGTCCATCGCCGACCAGTCCCGCACGATCCGGCTCCCCGTCCACCTGGTGGAGGAGCTCGGCCGGATCCGTCG
GGTGCAGCGCGAGTTCAACCGGGAGCACGGCCGTGAGCCGGAGCCGACGGAGATCGCGGCCGAGCTGGACACGAAGCCCG
AGCGGGTCGTCGACGTGCTCGACTGGGCGCGTGACCCGGTCTCGCTGAACATGTCGGTGGACGACCAGGGCGAGACGCAG
TTCGGCGACCTCTTGGAGGACACCTCGGCGGTCTCGCCGGAGCAGTCGGTGCTCACGCTGCTGCGCAGCGAGGAGCTCGA
CGACCTCATCGACAAGCTCGACCACCGGACGGCATCGATCATCCGCATGCGGTACGGGATCGAGGACGGGCGCGAGCGGA
CGCTGACGGAGGTCGGCAAGCAGCACGGTCTCACGCGCGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTGGAACTG
AAGAAGATGGCCCACGACACGGGCTTCGACGCGGTGGCCTAG

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 2 (Sigma70_r2)

(101-170)

Sigma-70 region 3 (Sigma70_r3)

(180-256)

Sigma-70, region 4 (Sigma70_r4)

(270-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40

90.09

0.36