Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG510_RS26455 Genome accession   NZ_CP108660
Coordinates   5897980..5899713 (-) Length   577 a.a.
NCBI ID   WP_406140059.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01089     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5892980..5904713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG510_RS26445 (OG510_26395) - 5894526..5895746 (+) 1221 WP_406140056.1 sigma-70 family RNA polymerase sigma factor -
  OG510_RS26450 (OG510_26400) rcrQ 5896001..5897980 (-) 1980 WP_406140057.1 ABC transporter ATP-binding protein Regulator
  OG510_RS26455 (OG510_26405) rcrP 5897980..5899713 (-) 1734 WP_406140059.1 ABC transporter ATP-binding protein Regulator
  OG510_RS26460 (OG510_26410) - 5899975..5901468 (-) 1494 WP_406140060.1 FGGY family carbohydrate kinase -
  OG510_RS26465 (OG510_26415) - 5901509..5901808 (-) 300 WP_164258730.1 YtxH domain-containing protein -
  OG510_RS26485 (OG510_26435) - 5903044..5903562 (+) 519 WP_406140061.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62680.06 Da        Isoelectric Point: 6.8413

>NTDB_id=664694 OG510_RS26455 WP_406140059.1 5897980..5899713(-) (rcrP) [Streptomyces sp. NBC_01089]
MLISLLRTYLRPYKKPMALLALLQLFQTCATLYLPTLNADIIDNGVVKGDSGYILSFGGLMIAISVVQVICNMGAVYFGA
RTASALGRDIRAGVFDRVQSFSAREVGHFGAPSLITRTTNDVQQIQMLVLMSFTLMASAPIMCVGAIVLALGQDVPLSLV
LIAVVPVMLVLVSLIVRRMRPLFRKMQVRLDTVNRVLREQITGNRVIRAFVKDAYEKERFKGANTELTDVSLGTARLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGAMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTDSSVVP
PLQPVTELARHGHLEIRGAGFRYPGAEASVLREVALEALPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGSDVR
DLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKGFVEKLEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQQPEIYLFDDSFSALDYATDAALRTALRRETSRATVVIVAQRVSTIRDADRIVVMDEGRVVGTGRHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=664694 OG510_RS26455 WP_406140059.1 5897980..5899713(-) (rcrP) [Streptomyces sp. NBC_01089]
GTGCTCATATCACTCCTGCGGACCTATTTGCGCCCGTACAAGAAACCCATGGCTCTGCTGGCACTGCTTCAGCTGTTCCA
GACCTGCGCCACCCTCTATCTGCCGACGCTCAACGCCGACATCATCGACAACGGTGTCGTGAAGGGCGACTCGGGTTACA
TCCTGAGCTTCGGCGGGCTCATGATCGCCATCAGCGTCGTGCAGGTGATCTGCAACATGGGCGCCGTCTACTTCGGCGCC
AGGACCGCCTCCGCGCTCGGCCGGGACATCCGGGCCGGTGTGTTCGACCGGGTGCAGTCCTTCTCCGCCCGCGAGGTCGG
GCACTTCGGCGCCCCCTCCCTCATCACCCGGACGACCAATGACGTCCAGCAGATCCAGATGCTGGTCCTGATGTCGTTCA
CCCTGATGGCCTCGGCGCCGATCATGTGCGTGGGCGCCATCGTGCTGGCGCTCGGCCAGGACGTACCGCTCTCGCTCGTA
CTGATCGCCGTCGTCCCGGTCATGCTCGTACTGGTCTCCCTGATCGTCCGGCGGATGCGGCCGCTCTTCCGGAAGATGCA
GGTCAGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCGTTCGTGAAGGACG
CGTACGAGAAGGAGCGCTTCAAGGGCGCCAACACCGAGCTGACCGACGTGTCCCTGGGGACCGCGCGGCTGATGGCCCTG
ATGTTCCCGACGGTGATGACCGTGGTGAACGTGTCGTCGATCGCGGTGGTCTGGTTCGGTGCCCACCGGATCGACAGCGG
CGCGATGCAGATCGGGGCGCTCACCGCGTTCCTCTCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCAGAGCGCATCCAGGAGGTACTGGGCACCGACTCCAGCGTGGTGCCG
CCGCTGCAGCCCGTCACCGAACTGGCCAGGCACGGCCATCTGGAAATCCGCGGGGCCGGGTTCAGGTACCCGGGCGCCGA
GGCGTCCGTACTGCGCGAGGTCGCCCTGGAGGCGCTGCCCGGTGAGACGACCGCGGTGATCGGGTCGACCGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTACCCCGGCTGTTCGACGCCACGGACGGCGAGGTGCTGGTGGACGGCAGCGATGTGCGG
GACCTCGACCCCGTACTGCTGGCGAAGACCGTGTCCCTGGTGCCGCAGAAGCCGTATCTGTTCTCCGGGACCGTCGCGAC
GAATCTGCGGTACGGGAACCCGGACGCGACCGACGAGGAACTGTGGCACGCGCTGGAGGTGGCGCAGGCGAAGGGCTTCG
TGGAGAAGCTCGAAGGCGGGCTCAACGCGCCGATCGCCCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGGCAGCGGCTG
GCGATCGCCAGGACGCTGGTGCAGCAGCCCGAGATCTATCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCCACCGA
CGCGGCGCTGCGGACCGCGCTGCGGCGCGAGACCTCCCGGGCGACCGTGGTGATCGTCGCGCAGCGCGTCTCGACCATCC
GCGATGCCGACCGGATCGTCGTGATGGACGAGGGCCGGGTCGTCGGCACCGGCCGGCACCACGAGCTGATGGACGGAAAT
GAGACATACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.309

100

0.407