Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG510_RS26450 Genome accession   NZ_CP108660
Coordinates   5896001..5897980 (-) Length   659 a.a.
NCBI ID   WP_406140057.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01089     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5891001..5902980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG510_RS26440 (OG510_26390) dnaG 5892404..5894308 (+) 1905 WP_406140055.1 DNA primase -
  OG510_RS26445 (OG510_26395) - 5894526..5895746 (+) 1221 WP_406140056.1 sigma-70 family RNA polymerase sigma factor -
  OG510_RS26450 (OG510_26400) rcrQ 5896001..5897980 (-) 1980 WP_406140057.1 ABC transporter ATP-binding protein Regulator
  OG510_RS26455 (OG510_26405) rcrP 5897980..5899713 (-) 1734 WP_406140059.1 ABC transporter ATP-binding protein Regulator
  OG510_RS26460 (OG510_26410) - 5899975..5901468 (-) 1494 WP_406140060.1 FGGY family carbohydrate kinase -
  OG510_RS26465 (OG510_26415) - 5901509..5901808 (-) 300 WP_164258730.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 70418.11 Da        Isoelectric Point: 5.9496

>NTDB_id=664693 OG510_RS26450 WP_406140057.1 5896001..5897980(-) (rcrQ) [Streptomyces sp. NBC_01089]
MAGPGGRMMAGPTQKSMDFKGSGKRLLRQLAQDRAALFTMLVAVIGSVALSVVGPKILGRATDLIFAGIIGRQLPAGTTK
VQALKGLHAKGQGAMADMLSGVDFTPGKGIDFSQVGEILLLALAAFACAGLLMLVTTRLAARIINQAMYRMREEIQAKLS
RLPLSYFDKAKRGEVLSRTTNDVDNIGQTMQQTMGQLMNSLLTIIGVLAMMFWISWILALVALVTVPLSVLVATRVGKRS
QPQFVQQWKVTGKLNAHIEEMYTGHALVKIFGRQEESAEAFREQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVAVI
GGLRVASGTLSIGDVQAFIQYSRQFSQPLTQVASMANLVQSGVASAERIFQLLDAEEQTPDGEVAGAGSGAGVGSGAGSE
AVVADRPGAARGSISLEKVSFRYEADKPLIDDLSLAVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGTDIAR
MTREELRSGIGMVLQDTWLFGGTIAENIAYGSSRAVSREEVEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLI
TIARAFLSDPVILVLDEATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGAIVEQGSHEELLAAD
GAYARLYAAQFAQAVVEVD

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=664693 OG510_RS26450 WP_406140057.1 5896001..5897980(-) (rcrQ) [Streptomyces sp. NBC_01089]
ATGGCCGGTCCTGGTGGACGCATGATGGCAGGACCGACCCAGAAGTCGATGGACTTCAAGGGGTCGGGCAAACGGCTGCT
GCGGCAGCTGGCGCAGGACCGTGCCGCGCTGTTCACGATGCTGGTGGCCGTCATCGGCAGCGTCGCGCTCTCGGTCGTCG
GACCGAAGATCCTGGGCCGGGCGACCGACCTGATCTTCGCAGGGATCATCGGGAGACAGCTGCCCGCAGGCACGACCAAG
GTGCAGGCCCTGAAGGGTCTGCACGCCAAGGGCCAGGGAGCGATGGCCGACATGCTCTCCGGTGTGGACTTCACCCCGGG
CAAGGGCATCGACTTCTCGCAGGTCGGCGAGATCCTGCTGCTCGCGCTCGCGGCCTTCGCCTGCGCGGGGCTGCTGATGC
TCGTCACCACCCGGCTCGCGGCCCGGATCATCAACCAGGCCATGTACCGGATGCGTGAGGAGATCCAGGCGAAGCTCTCG
CGGCTGCCGCTGTCGTACTTCGACAAGGCGAAGCGCGGTGAGGTGCTCAGCCGGACGACCAACGACGTCGACAACATCGG
CCAGACCATGCAGCAGACCATGGGTCAGCTGATGAACTCGCTGCTCACCATCATCGGTGTGCTGGCGATGATGTTCTGGA
TCTCCTGGATCCTGGCGCTGGTCGCGCTGGTGACCGTACCGCTCTCGGTGCTGGTGGCCACGCGCGTCGGCAAGCGGTCG
CAGCCGCAGTTCGTGCAGCAGTGGAAGGTCACGGGCAAGCTCAACGCCCATATCGAGGAGATGTACACCGGGCACGCCCT
GGTCAAGATCTTCGGGCGGCAGGAGGAGTCGGCCGAGGCGTTCCGCGAGCAGAACGACGCGCTGTACGAGGCCGGGTTCA
AGGCCCAGTTCAACAGCGGCATCATGCAGCCGCTGATGATGTTCGTCTCCAACCTCAACTATGTGCTGGTGGCGGTCATC
GGCGGGCTGCGGGTCGCTTCCGGGACGCTGTCGATCGGTGATGTGCAGGCGTTCATCCAGTACTCACGGCAGTTCTCGCA
GCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGTGTGGCGTCCGCCGAGCGGATCTTCCAGCTGCTCG
ACGCGGAGGAGCAGACTCCGGACGGTGAGGTCGCCGGGGCGGGATCCGGTGCGGGTGTGGGATCCGGTGCGGGCTCCGAA
GCCGTTGTCGCCGACCGGCCGGGGGCCGCTCGCGGCAGCATCTCGCTGGAGAAGGTGTCCTTCCGGTACGAGGCCGACAA
GCCGCTCATCGACGATCTGTCGCTCGCGGTCGAACCCGGGCACACCGTCGCGATCGTCGGACCGACCGGCGCGGGCAAGA
CCACGCTGGTCAATCTGCTCATGCGGTTCTACGAGGTGACCGGCGGGCGTATCACGCTCGACGGGACCGACATCGCCAGG
ATGACGCGTGAGGAGCTGCGCTCCGGGATCGGCATGGTGCTCCAGGACACCTGGCTCTTCGGCGGCACGATCGCGGAGAA
CATCGCGTACGGCTCATCGCGCGCCGTCAGCCGCGAGGAGGTCGAGGAGGCGGCCCGGGCGGCCCACGCCGACCGGTTCA
TCCGCACGCTTCCCGACGGCTACGACACGGTCATCGACGACGAGGGTACGGGGGTGAGCGCGGGCGAGAAGCAGCTGATC
ACGATCGCGCGGGCCTTCCTCTCCGATCCGGTGATCCTGGTGCTCGACGAGGCGACCAGCTCCGTCGACACCCGTACCGA
GGTGCTGATCCAGAAGGCGATGGCCCGGCTGGCGCACGGCCGCACCAGCTTCGTCATCGCGCACCGGCTCTCCACGATCC
GGGACGCGGATGTGATTCTGGTGATGGAGAGCGGGGCGATCGTGGAGCAGGGGTCGCACGAGGAGTTGCTCGCTGCGGAT
GGGGCTTATGCGCGGCTCTATGCGGCGCAGTTCGCGCAGGCTGTGGTGGAGGTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(38-349)

ABC transporter (ABC_tran)

(431-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.25

97.269

0.392