Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG510_RS22635 Genome accession   NZ_CP108660
Coordinates   5031584..5032564 (+) Length   326 a.a.
NCBI ID   WP_406139122.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01089     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5026584..5037564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG510_RS22610 (OG510_22565) - 5027106..5027744 (+) 639 WP_406139117.1 TetR/AcrR family transcriptional regulator -
  OG510_RS22615 (OG510_22570) - 5028084..5029613 (+) 1530 WP_406142488.1 MFS transporter -
  OG510_RS22620 (OG510_22575) - 5029673..5030188 (-) 516 WP_406139118.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG510_RS22625 (OG510_22580) - 5030280..5031059 (+) 780 WP_406139120.1 dioxygenase -
  OG510_RS22630 (OG510_22585) - 5031131..5031388 (-) 258 Protein_4477 GNAT family N-acetyltransferase -
  OG510_RS22635 (OG510_22590) rpoS 5031584..5032564 (+) 981 WP_406139122.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OG510_RS22640 (OG510_22595) - 5032769..5034331 (-) 1563 WP_406139124.1 DHA2 family efflux MFS transporter permease subunit -
  OG510_RS22645 (OG510_22600) - 5034394..5035365 (+) 972 WP_406139126.1 helix-turn-helix transcriptional regulator -
  OG510_RS22650 (OG510_22605) - 5035448..5036194 (-) 747 WP_406139127.1 DUF6227 family protein -
  OG510_RS22655 (OG510_22610) - 5036352..5037524 (-) 1173 WP_406139129.1 P1 family peptidase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36453.16 Da        Isoelectric Point: 4.9566

>NTDB_id=664684 OG510_RS22635 WP_406139122.1 5031584..5032564(+) (rpoS) [Streptomyces sp. NBC_01089]
MATRAVARRSDRASSVRAVGGEIADRDLVGMYLDEIARTPLLDAEKEVELSQTIEAGVYAQQILDGSVQSEAAGASREEL
EALVAAGERAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGVVRAVEKFDYAKGFKFSTYATWWIRQAITRSIAD
QSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEHEEIAAELDTKPARVSDVLDWARDPVSLNMPVDDQGETQFGDLLED
TSAVSPEQSVMTLLRSEELDELIGKLDHRTASIIKMRFGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKMADDV
GFDAAA

Nucleotide


Download         Length: 981 bp        

>NTDB_id=664684 OG510_RS22635 WP_406139122.1 5031584..5032564(+) (rpoS) [Streptomyces sp. NBC_01089]
ATGGCAACCCGTGCCGTCGCCCGTCGATCCGACCGGGCAAGCAGCGTTCGCGCCGTAGGCGGGGAGATCGCCGACCGCGA
CCTGGTCGGCATGTACCTCGACGAAATAGCGCGTACGCCACTGCTCGACGCCGAAAAGGAAGTCGAGCTGTCCCAGACCA
TCGAGGCCGGGGTGTACGCCCAGCAGATCCTCGACGGTTCCGTGCAGAGCGAGGCGGCCGGGGCCTCGCGTGAGGAACTG
GAGGCGCTGGTCGCCGCCGGGGAGCGCGCCAAGGACGTCTTCATCCGGTCCAACCTGCGACTGGTCGTCGCTGTCGCCCG
CCGCTATCCGCGTGCCGGCCTGCCGCTGCTCGACCTGATCCAGGAGGGCAACGCGGGCGTGGTGCGCGCGGTCGAGAAGT
TCGACTACGCGAAGGGCTTCAAGTTCTCCACCTACGCGACGTGGTGGATCCGCCAGGCCATCACCCGGTCGATAGCGGAC
CAGTCGCGCACCATCCGGCTCCCTGTGCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGTGTCCAGCGCGAGTTCAACCG
TGAGCACGGCCGCGACCCCGAGCACGAGGAGATCGCAGCCGAGCTGGACACCAAGCCGGCCCGGGTGAGCGACGTGCTGG
ACTGGGCCCGTGACCCGGTCAGCCTGAACATGCCGGTGGACGACCAGGGCGAGACCCAGTTCGGTGACCTCCTGGAGGAC
ACGTCGGCGGTGTCGCCCGAGCAGTCGGTGATGACGCTGCTGCGCAGTGAGGAGCTGGACGAGCTGATCGGCAAGCTCGA
TCACCGCACGGCTTCGATCATCAAGATGCGGTTCGGTATCGACGACGGCCGGGAGCGGACGCTGACCGAGGTCGGCAAGG
AGCACGGTCTGACGCGTGAGCGGATCCGCCAGATCGAGAAGCACGCCCTGCTCGAACTGAAGAAGATGGCCGACGACGTG
GGCTTCGACGCAGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70, region 4 (Sigma70_r4)

(263-315)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(27-60)

Sigma-70 region 3 (Sigma70_r3)

(173-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40

92.025

0.368