Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG510_RS15965 Genome accession   NZ_CP108660
Coordinates   3605538..3606935 (+) Length   465 a.a.
NCBI ID   WP_406137532.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01089     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3600538..3611935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG510_RS15945 (OG510_15905) - 3600711..3601529 (-) 819 WP_406137526.1 sugar phosphate isomerase/epimerase family protein -
  OG510_RS15950 (OG510_15910) - 3601732..3602664 (-) 933 WP_406137528.1 Ppx/GppA family phosphatase -
  OG510_RS15955 (OG510_15915) - 3602742..3603557 (+) 816 WP_406137529.1 hypothetical protein -
  OG510_RS15960 (OG510_15920) - 3603641..3605353 (-) 1713 WP_406137531.1 BACON domain-containing protein -
  OG510_RS15965 (OG510_15925) radA/sms 3605538..3606935 (+) 1398 WP_406137532.1 DNA repair protein RadA Machinery gene
  OG510_RS15970 (OG510_15930) disA 3606992..3608116 (+) 1125 WP_164264090.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG510_RS15975 (OG510_15935) - 3608273..3609109 (-) 837 WP_406142416.1 hypothetical protein -
  OG510_RS15980 (OG510_15940) - 3609293..3609901 (+) 609 WP_406137534.1 phosphatase PAP2 family protein -
  OG510_RS15985 (OG510_15945) - 3609918..3611009 (+) 1092 WP_406137535.1 A/G-specific adenine glycosylase -
  OG510_RS15990 (OG510_15950) - 3611205..3611756 (+) 552 WP_266854649.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 48741.76 Da        Isoelectric Point: 7.7378

>NTDB_id=664672 OG510_RS15965 WP_406137532.1 3605538..3606935(+) (radA/sms) [Streptomyces sp. NBC_01089]
MATRAKTRERPSYRCTECGYTTAKWLGRCPECQTWGTVEEQGGGPAVRTTAAGPVSSAAVPIGQVDSRTATARSTGVAEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAAGSDHRTLYVTAEESASQVRLRADRIHAINDHLYLAAETDLAAVL
GHLDAVKPSLLVLDSVQTVASPELDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVTEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYTATVGGVKLSEPAADLAVALALASAAGDVPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVIEVADMGDALRALPRRSRARAPQDE

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=664672 OG510_RS15965 WP_406137532.1 3605538..3606935(+) (radA/sms) [Streptomyces sp. NBC_01089]
ATGGCCACCCGTGCGAAGACCAGAGAACGGCCGTCCTACCGCTGCACCGAATGCGGGTACACGACGGCCAAGTGGCTGGG
CCGCTGCCCCGAGTGCCAGACGTGGGGGACGGTCGAGGAGCAGGGCGGCGGGCCCGCCGTGCGGACGACGGCCGCCGGTC
CTGTCAGCAGCGCCGCGGTCCCCATCGGCCAGGTCGACAGCCGTACGGCGACGGCGCGTTCGACCGGGGTCGCCGAGCTG
GACCGGGTGCTCGGCGGCGGTCTGGTGCCGGGCGCCGTGGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACCCT
GCTGCTCGATGTCGCGGCGAAGGCGGCCGGCTCCGACCACCGCACGCTCTATGTGACGGCCGAGGAGTCGGCGAGCCAGG
TCAGGCTGCGCGCCGACCGGATCCACGCGATCAACGACCACCTCTATCTGGCCGCCGAGACGGACCTCGCGGCGGTGCTC
GGCCACCTCGACGCGGTGAAGCCGTCCCTGCTGGTCCTGGACTCCGTACAGACGGTGGCCTCACCCGAGCTGGACGGCGC
GCCCGGCGGCATGGCCCAGGTGCGCGAGGTGGCGGGCGCCCTGATCCGCGCGTCCAAGGAGCGCGGGATGTCCACGCTGC
TCGTCGGGCACGTCACGAAGGACGGCGCGATCGCGGGGCCCCGGCTCCTTGAGCACCTGGTGGACGTCGTGCTGTCCTTC
GAGGGCGACCGGCACGCCCGGCTGCGGCTGGTCCGCGGCGTCAAGAACCGGTACGGGGCGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCGAGCGGGCTCTTCCTGACGCGCCGTGACGAACCGGTGCCGG
GGACCTGTCTGACGGTCACCCTGGAGGGCAAGCGCCCCCTGGTCACCGAGGTCCAGGCGCTCACGGTCGACTCGCAGATC
CCCTCGCCCCGGCGCACCACGTCCGGTCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTCCTCGAACAGCGCGGCAG
GATCAGCGCGCTCGGCAAGCGCGACATCTACACGGCGACGGTCGGCGGCGTGAAGCTCAGCGAACCGGCCGCCGACCTGG
CCGTCGCGCTGGCCCTGGCCTCCGCGGCCGGAGACGTCCCGCTCCCGAAGAACCTGGTGGCGATCGGCGAAGTAGGGCTC
GCGGGCGAGGTCAGAAGGGTCACCGGCGTCCAGCGCAGACTCGCCGAGGCCCACCGTCTCGGCTTCACCCACGCCCTCGT
ACCGACCGATCCGGGGAAGGTCCCCGCGGGCATGAAGGTCATCGAAGTGGCGGACATGGGAGACGCGCTGCGAGCCCTTC
CGCGCCGTTCAAGGGCCCGCGCGCCTCAGGACGAGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(81-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-40)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.077

97.849

0.422
  radA Streptococcus mitis SK321

41.41

97.634

0.404
  radA Streptococcus mitis NCTC 12261

41.41

97.634

0.404
  radA Streptococcus pneumoniae TIGR4

41.463

96.989

0.402
  radA Streptococcus pneumoniae R6

41.463

96.989

0.402
  radA Streptococcus pneumoniae Rx1

41.463

96.989

0.402
  radA Streptococcus pneumoniae D39

41.463

96.989

0.402