Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MOQ58_RS25570 Genome accession   NZ_CP093428
Coordinates   5606515..5607882 (-) Length   455 a.a.
NCBI ID   WP_008028888.1    Uniprot ID   A0A2V2ALB9
Organism   Pseudomonas migulae strain 8R6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5601515..5612882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOQ58_RS25545 (MOQ58_25505) - 5601658..5602347 (+) 690 WP_192228011.1 GntR family transcriptional regulator -
  MOQ58_RS25550 (MOQ58_25510) yjiA 5602443..5603414 (-) 972 WP_008028882.1 GTPase -
  MOQ58_RS25555 (MOQ58_25515) - 5603577..5603774 (-) 198 WP_007895266.1 YbdD/YjiX family protein -
  MOQ58_RS25560 (MOQ58_25520) - 5603789..5605855 (-) 2067 WP_008028884.1 carbon starvation CstA family protein -
  MOQ58_RS25565 (MOQ58_25525) - 5606014..5606382 (+) 369 WP_280162261.1 PilZ domain-containing protein -
  MOQ58_RS25570 (MOQ58_25530) radA 5606515..5607882 (-) 1368 WP_008028888.1 DNA repair protein RadA Machinery gene
  MOQ58_RS25575 (MOQ58_25535) mscL 5608537..5608953 (+) 417 WP_008040320.1 large-conductance mechanosensitive channel protein MscL -
  MOQ58_RS25580 (MOQ58_25540) - 5608997..5609773 (-) 777 WP_280162262.1 ferredoxin--NADP reductase -
  MOQ58_RS25585 (MOQ58_25545) - 5610110..5610841 (+) 732 WP_280164051.1 LuxR family transcriptional regulator -
  MOQ58_RS25590 (MOQ58_25550) - 5610992..5612116 (+) 1125 WP_280162263.1 methyltransferase -
  MOQ58_RS25595 (MOQ58_25555) - 5612195..5612362 (-) 168 WP_280162264.1 DUF2474 domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48748.20 Da        Isoelectric Point: 6.8987

>NTDB_id=664665 MOQ58_RS25570 WP_008028888.1 5606515..5607882(-) (radA) [Pseudomonas migulae strain 8R6]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWTGQQAQIKTLAEVSVEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=664665 MOQ58_RS25570 WP_008028888.1 5606515..5607882(-) (radA) [Pseudomonas migulae strain 8R6]
ATGGCCAAGGCCAAACGCATGTACGGCTGCACCGAGTGCGGCTCAACCTTCCCCAAGTGGGCCGGCCAGTGCGGCGAGTG
CGGGGCCTGGAACACCTTGACCGAAACCATGGTCGAGAGCGGCGGTGCCGCAGCCCCCAGCGGCCGCACCGGCTGGACCG
GCCAACAGGCACAGATCAAGACTCTGGCCGAAGTCAGCGTCGAAGAAATACCGCGCTTTTCCACTGCCTCCAGTGAACTC
GATCGCGTCCTGGGCGGCGGGCTGGTGGACGGTTCGGTGGTATTGATCGGCGGTGATCCGGGCATCGGCAAATCAACCAT
CCTTTTGCAAACCTTGTGCAACCTCGCCAAGAGCATGCCGGCGTTGTACGTCACGGGCGAAGAGTCCCAGCAGCAAGTGG
CCATGCGCGCCCGACGCCTGGGATTACCGCAGGATCAACTGCGGGTCATGACCGAAACCTGCATCGAAACCATTATCGCC
ACCGCCCGGGTCGAAAAGCCCAAGGTCATGGTGATCGACTCGATTCAGACGATTTTCACCGAGCAGCTGCAATCGGCACC
GGGCGGTGTGTCCCAGGTGCGGGAGAGCGCGGCATTGCTGGTGCGCTATGCCAAACAGAGTGGCACAGCCATTTTCCTGG
TCGGCCACGTAACTAAAGAAGGTGCGCTGGCCGGTCCGCGCGTGCTGGAGCACATGGTCGATACCGTGCTGTATTTCGAG
GGCGAATCCGACGGTCGCTTGCGTTTGCTGCGGGCGGTGAAGAACCGTTTTGGCGCGGTCAACGAACTGGGCGTGTTCGG
CATGACCGACAAGGGTTTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTCACTCGTGCACAGGAAGAAGTCCCGGGCA
GTGTGGTCATGGCAACGTGGGAAGGCACCCGACCAATGCTGGTGGAAGTTCAGGCGTTGGTGGATGACAGCCATCTGGCC
AACCCGCGTCGGGTTACGTTGGGGCTGGATCAGAACCGACTGGCGATGTTGCTGGCGGTTCTGCATCGACACGGCGGTAT
TCCGACCCACGACCAGGACGTGTTCCTCAACGTGGTGGGCGGCGTGAAGGTATTGGAAACCGCTTCCGACCTGGCGCTGA
TGGCGGCGGTCATGTCCAGTTTGCGCAACCGGCCATTGCCCCATGACCTGCTGGTGTTCGGCGAAGTCGGTTTGTCTGGC
GAAGTGCGTCCGGTACCAAGCGGGCAGGAACGCTTGAAAGAAGCGGCCAAGCACGGCTTCAAACGGGCCATCGTGCCCAA
GGGCAATGCGCCGAAGGAGTCTCCGCCGGGATTGCAGATTATTGCCGTGACCCGCCTCGAACAGGCCCTCGACGCCCTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2V2ALB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466
  radA Streptococcus pneumoniae Rx1

46.491

100

0.466
  radA Streptococcus pneumoniae D39

46.491

100

0.466
  radA Streptococcus pneumoniae R6

46.491

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.491

100

0.466