Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG510_RS09705 Genome accession   NZ_CP108660
Coordinates   2226836..2228056 (-) Length   406 a.a.
NCBI ID   WP_406136385.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01089     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2221836..2233056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG510_RS09685 (OG510_09645) - 2222074..2222412 (-) 339 WP_164266378.1 P-II family nitrogen regulator -
  OG510_RS09690 (OG510_09650) - 2222409..2223767 (-) 1359 WP_406136382.1 ammonium transporter -
  OG510_RS09695 (OG510_09655) - 2224130..2225605 (-) 1476 WP_406136384.1 hypothetical protein -
  OG510_RS09700 (OG510_09660) - 2226034..2226690 (+) 657 WP_164266381.1 bifunctional DNA primase/polymerase -
  OG510_RS09705 (OG510_09665) pilA 2226836..2228056 (-) 1221 WP_406136385.1 signal recognition particle-docking protein FtsY Machinery gene
  OG510_RS09710 (OG510_09670) - 2228248..2229717 (+) 1470 WP_406136387.1 purine-cytosine permease family protein -
  OG510_RS09715 (OG510_09675) - 2229779..2230759 (+) 981 WP_406136389.1 LLM class flavin-dependent oxidoreductase -
  OG510_RS09720 (OG510_09680) - 2230787..2232205 (-) 1419 WP_406136390.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 42713.82 Da        Isoelectric Point: 4.4318

>NTDB_id=664659 OG510_RS09705 WP_406136385.1 2226836..2228056(-) (pilA) [Streptomyces sp. NBC_01089]
MEIVILAVVIALVAVGAISGLVVSSRKKKQLPTAPPSAPTITAPPAEPQVGEDAAPPRDESRRTIEEVDLPPADEAVGAP
AAVEDPVVAEPVAPSIEIPEPTEGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEETWEEIEDTLLTADVGVAPTQELVE
RLRERVRVLGTRTPQELRTLLREELLNLLGTDFDRAVKTEGGLETPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLG
AADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAYDAVKEGIKESADVVLIDTAGRLHTKTGLMDELGKVKRVVEKH
GPLDEVLLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGPDDLAPFEPEAFV
DALVGD

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=664659 OG510_RS09705 WP_406136385.1 2226836..2228056(-) (pilA) [Streptomyces sp. NBC_01089]
ATGGAAATCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGCGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCCACGGCACCGCCGAGTGCGCCGACCATCACAGCGCCGCCCGCCGAACCCCAGGTCGGCGAGGACG
CTGCCCCACCGCGCGACGAGTCGCGCCGCACCATCGAGGAGGTTGACCTCCCGCCCGCGGACGAGGCCGTGGGCGCTCCT
GCTGCCGTCGAGGACCCCGTCGTCGCGGAGCCCGTCGCCCCCAGCATCGAGATCCCGGAGCCGACCGAGGGCCGTCTCGT
ACGGCTGCGCGCCCGGCTCGCCCGCTCGCAGAACTCGCTCGGCAAGGGACTGCTCACCCTGCTCTCCCGGGACAACCTCG
ACGAGGAGACCTGGGAGGAGATCGAGGACACCCTGCTCACGGCCGACGTCGGGGTCGCTCCGACGCAGGAGCTGGTCGAG
CGGCTGCGCGAGCGGGTCAGGGTGCTCGGCACCCGCACACCGCAGGAGCTGCGCACGCTGCTGCGCGAGGAGCTGCTGAA
TCTGCTCGGTACGGACTTCGACCGTGCGGTCAAGACCGAGGGCGGCCTGGAGACTCCCGGCGTCGTCATGGTCGTCGGGG
TCAACGGCACCGGCAAGACCACCACCACGGGCAAGCTCGCCCGGGTCCTGGTGGCCGACGGCCGCAGTGTGGTGCTCGGC
GCCGCCGACACCTTCCGCGCCGCCGCCGCCGACCAGCTCCAGACCTGGGGCGAACGGGTCGGGGCGCGCACCGTGCGCGG
CCCCGAGGGCGGCGACCCGGCGTCGATCGCCTACGACGCGGTGAAGGAAGGCATCAAGGAGAGCGCCGATGTCGTCCTCA
TCGACACCGCGGGGCGGCTGCACACCAAGACCGGCCTGATGGACGAGCTCGGCAAGGTCAAGCGGGTCGTGGAGAAGCAC
GGCCCGCTGGACGAGGTGCTGCTCGTACTGGACGCGACGACCGGGCAGAACGGCCTGGTGCAGGCGCGGGTGTTCGCCGA
GGTGGTGGACATCACCGGCATCGTGCTGACCAAGCTGGACGGGACGGCGAAGGGCGGCATCGTGATCGCGGTCCAGCGCG
AGCTGGGCGTGCCGGTCAAGCTGGTGGGCCTCGGCGAGGGTCCCGACGACCTGGCGCCCTTCGAGCCTGAGGCGTTCGTG
GACGCGCTGGTCGGGGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(120-185)

SRP54-type protein, GTPase domain (SRP54)

(207-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.644

89.901

0.374