Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | OG254_RS39685 | Genome accession | NZ_CP108659 |
| Coordinates | 8774948..8777503 (-) | Length | 851 a.a. |
| NCBI ID | WP_405591992.1 | Uniprot ID | - |
| Organism | Streptomyces sp. NBC_01092 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 8769948..8782503
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OG254_RS39670 (OG254_39570) | - | 8770570..8772138 (-) | 1569 | WP_405591984.1 | alpha/beta fold hydrolase | - |
| OG254_RS39675 (OG254_39575) | - | 8772255..8773013 (-) | 759 | WP_405591987.1 | hypothetical protein | - |
| OG254_RS39680 (OG254_39580) | ggt | 8773133..8774929 (+) | 1797 | WP_405591990.1 | gamma-glutamyltransferase | - |
| OG254_RS39685 (OG254_39585) | clpC | 8774948..8777503 (-) | 2556 | WP_405591992.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| OG254_RS39690 (OG254_39590) | map | 8778136..8778903 (-) | 768 | WP_405591995.1 | type I methionyl aminopeptidase | - |
| OG254_RS39695 (OG254_39595) | - | 8778937..8779197 (+) | 261 | WP_405591998.1 | helix-turn-helix domain-containing protein | - |
| OG254_RS39700 (OG254_39600) | - | 8779328..8780920 (+) | 1593 | WP_405592001.1 | hypothetical protein | - |
| OG254_RS39705 (OG254_39605) | - | 8781110..8781952 (+) | 843 | WP_351194044.1 | nitrilase-related carbon-nitrogen hydrolase | - |
Sequence
Protein
Download Length: 851 a.a. Molecular weight: 92635.76 Da Isoelectric Point: 4.8169
>NTDB_id=664636 OG254_RS39685 WP_405591992.1 8774948..8777503(-) (clpC) [Streptomyces sp. NBC_01092]
MTSGFNGGPEDYDPFGEFLARFFGGPRPGPRQIDIGRLLSQPARELVRGAAQYAAEHGSRDLDTQHLLRAALSAEPTRSL
LTRAGADPDSLATEIDERSGPVQHPPGEAPPPTSLSLTPAAKRALLDAHDLARTRGAGYIGPEHVLSALAANPDSAAGHI
LNAARFAPSGMPPEAPDGAQPRAGVDQRPRVDTGTPTLDKYGRDLTELARQGRVDPVIGRDEEIEQTVEVLSRRGKNNPV
LIGDAGVGKTAIVEGLAQRITDGDVPDVLSGRRVIALDLAGVVAGTRYRGDFEERLTNIVDEIRAHSDRLIVFIDELHTV
VGAGGGGEGGSMDAGNILKPALARGELHVVGATTLEEYRRIEKDAALSRRFQPILVPEPTTADAIEILRGLRDRYEAHHQ
VRYSDEALVAAVELSDRYLTDRRLPDKAIDLIDQAGARVRLGARSKGTDVRAMEREVEQLTRDKDQAVADESYEQATGLR
DRIVDLKQRIADASGDEEADEGIDLTVTAEAIAEVVSRQTGIPVSSLTEEEKDRLLGLEEHLHERVVGQDEAVRVVSDAV
LRSRAGLASPDRPIGSFLFLGPTGVGKTELARALAEALFGSEERMVRLDMSEYQERHTVSRLIGAPPGYVGHEEAGQLTE
VVRRHPYSLLLLDEIEKAHPDVFNILLQVLDDGRLTDSQGRTVDFTNAVIVMTSNLGSEAIGRGGAGIGFGSGDEGAEEE
ARSERILRPLRQQFRPEFLNRIDEIVVFRRLTPEQLERITNLLLDRTRRLLHAQGVAVEFTGAAVDWLSERGYQPEYGAR
PLRRTIQREVDNQLSRLLLDGRIGEGGRVTVDVADGRLAFRTEDLPPAPEL
MTSGFNGGPEDYDPFGEFLARFFGGPRPGPRQIDIGRLLSQPARELVRGAAQYAAEHGSRDLDTQHLLRAALSAEPTRSL
LTRAGADPDSLATEIDERSGPVQHPPGEAPPPTSLSLTPAAKRALLDAHDLARTRGAGYIGPEHVLSALAANPDSAAGHI
LNAARFAPSGMPPEAPDGAQPRAGVDQRPRVDTGTPTLDKYGRDLTELARQGRVDPVIGRDEEIEQTVEVLSRRGKNNPV
LIGDAGVGKTAIVEGLAQRITDGDVPDVLSGRRVIALDLAGVVAGTRYRGDFEERLTNIVDEIRAHSDRLIVFIDELHTV
VGAGGGGEGGSMDAGNILKPALARGELHVVGATTLEEYRRIEKDAALSRRFQPILVPEPTTADAIEILRGLRDRYEAHHQ
VRYSDEALVAAVELSDRYLTDRRLPDKAIDLIDQAGARVRLGARSKGTDVRAMEREVEQLTRDKDQAVADESYEQATGLR
DRIVDLKQRIADASGDEEADEGIDLTVTAEAIAEVVSRQTGIPVSSLTEEEKDRLLGLEEHLHERVVGQDEAVRVVSDAV
LRSRAGLASPDRPIGSFLFLGPTGVGKTELARALAEALFGSEERMVRLDMSEYQERHTVSRLIGAPPGYVGHEEAGQLTE
VVRRHPYSLLLLDEIEKAHPDVFNILLQVLDDGRLTDSQGRTVDFTNAVIVMTSNLGSEAIGRGGAGIGFGSGDEGAEEE
ARSERILRPLRQQFRPEFLNRIDEIVVFRRLTPEQLERITNLLLDRTRRLLHAQGVAVEFTGAAVDWLSERGYQPEYGAR
PLRRTIQREVDNQLSRLLLDGRIGEGGRVTVDVADGRLAFRTEDLPPAPEL
Nucleotide
Download Length: 2556 bp
>NTDB_id=664636 OG254_RS39685 WP_405591992.1 8774948..8777503(-) (clpC) [Streptomyces sp. NBC_01092]
ATGACCAGCGGCTTCAATGGTGGTCCGGAGGACTACGACCCCTTCGGAGAATTCCTCGCCCGCTTCTTCGGCGGACCGCG
CCCCGGCCCCCGGCAGATCGACATCGGCCGCCTGCTCAGTCAGCCGGCCCGGGAACTGGTGCGGGGCGCCGCGCAGTACG
CCGCCGAGCACGGCAGCCGCGACCTGGACACCCAGCACCTGCTGCGCGCCGCGCTGTCCGCCGAGCCGACCCGGAGTCTG
CTCACCCGGGCGGGCGCGGACCCGGACTCGCTGGCGACGGAGATCGACGAGCGTTCCGGCCCGGTCCAGCACCCGCCGGG
CGAGGCCCCGCCGCCGACTTCGCTGTCCCTGACCCCGGCCGCCAAGCGGGCCCTGCTGGACGCGCACGACCTGGCCAGGA
CGCGCGGAGCCGGTTACATCGGCCCGGAGCACGTGCTCAGCGCCCTCGCCGCGAACCCCGACTCGGCGGCCGGGCACATC
CTGAACGCGGCCCGCTTCGCCCCGTCCGGCATGCCGCCCGAGGCCCCGGACGGGGCCCAGCCCAGGGCGGGCGTCGATCA
GCGGCCACGCGTCGACACCGGTACGCCCACTCTCGACAAGTACGGCCGCGACCTCACCGAACTGGCCCGCCAGGGCCGTG
TCGACCCGGTGATCGGGCGTGACGAGGAGATCGAGCAGACCGTCGAGGTGCTCTCCCGGCGCGGCAAGAACAACCCGGTG
CTGATCGGCGACGCGGGCGTGGGCAAGACCGCGATCGTGGAGGGCCTGGCCCAGAGGATCACCGACGGCGACGTGCCCGA
CGTGCTCAGCGGCCGCCGGGTCATCGCGCTGGACCTGGCGGGCGTGGTCGCCGGCACCCGCTACCGGGGGGACTTCGAGG
AGCGGCTCACCAACATCGTGGACGAGATCCGCGCGCACTCCGACCGGCTGATCGTGTTCATCGACGAGTTGCACACCGTC
GTGGGCGCCGGAGGCGGCGGCGAGGGCGGGTCCATGGACGCCGGGAACATCCTCAAGCCGGCCCTCGCCCGCGGCGAACT
GCACGTCGTGGGCGCGACCACGCTGGAGGAGTACCGCCGGATCGAGAAGGACGCGGCACTCTCCCGCCGCTTCCAGCCGA
TCCTGGTCCCCGAGCCGACGACCGCCGACGCGATCGAGATCCTGCGCGGCCTGCGCGACCGCTACGAGGCCCACCACCAG
GTCCGCTACAGCGACGAGGCGCTCGTCGCCGCCGTGGAGCTGTCCGACCGCTACCTCACCGACCGGCGCCTGCCGGACAA
GGCCATCGACCTGATCGACCAGGCGGGCGCCAGGGTACGACTGGGCGCCCGCTCCAAGGGCACGGACGTACGGGCCATGG
AGCGCGAGGTCGAGCAGCTGACCCGGGACAAGGACCAGGCGGTCGCCGACGAGAGCTACGAGCAGGCGACCGGGCTGCGT
GACCGGATCGTCGATCTGAAGCAGCGCATCGCGGACGCCTCCGGCGACGAGGAGGCCGACGAGGGCATCGACCTGACGGT
CACCGCCGAGGCCATCGCGGAGGTCGTGTCCCGGCAGACCGGCATCCCGGTGAGCAGCCTCACCGAGGAGGAGAAGGACC
GGCTGCTCGGCCTGGAGGAGCATCTGCACGAGCGGGTCGTCGGGCAGGACGAGGCGGTGCGCGTGGTCTCCGACGCGGTG
CTGCGCTCCCGGGCCGGACTCGCCAGCCCCGACCGGCCGATCGGCAGTTTCCTGTTCCTCGGCCCGACCGGGGTCGGCAA
GACCGAGCTGGCCCGGGCGCTCGCCGAGGCGCTGTTCGGCAGCGAGGAGCGCATGGTCCGCCTCGACATGAGCGAGTACC
AGGAACGCCACACGGTCAGCCGGCTGATCGGCGCCCCGCCCGGCTACGTCGGCCACGAGGAGGCCGGCCAGCTCACCGAG
GTGGTGCGCCGGCACCCGTACTCGCTGCTCCTGCTCGACGAGATCGAGAAGGCCCACCCGGACGTCTTCAACATCCTGCT
CCAGGTGCTGGACGACGGGCGGCTGACCGACTCCCAGGGCCGCACCGTGGACTTCACCAACGCGGTCATCGTGATGACCA
GCAATCTCGGCTCGGAGGCGATCGGCCGCGGCGGCGCCGGCATCGGGTTCGGCTCGGGCGACGAGGGGGCCGAGGAGGAG
GCGCGCAGCGAACGGATCCTGCGGCCGCTGCGCCAGCAGTTCCGGCCCGAGTTCCTCAACCGCATCGACGAGATCGTCGT
CTTCCGCCGGCTGACCCCCGAGCAGCTGGAGCGGATCACGAACCTGCTGCTGGACCGGACCCGCCGTCTGCTGCACGCCC
AGGGCGTCGCGGTCGAGTTCACCGGCGCGGCCGTCGACTGGCTCTCCGAGCGCGGCTACCAGCCCGAGTACGGCGCCCGC
CCGCTGCGCCGCACCATTCAGCGGGAGGTCGACAACCAGCTGTCCCGGCTGCTCCTGGACGGCCGGATCGGCGAGGGCGG
CCGGGTCACGGTGGACGTGGCGGACGGGCGGCTCGCCTTCCGCACGGAAGACCTGCCGCCCGCCCCCGAGTTGTGA
ATGACCAGCGGCTTCAATGGTGGTCCGGAGGACTACGACCCCTTCGGAGAATTCCTCGCCCGCTTCTTCGGCGGACCGCG
CCCCGGCCCCCGGCAGATCGACATCGGCCGCCTGCTCAGTCAGCCGGCCCGGGAACTGGTGCGGGGCGCCGCGCAGTACG
CCGCCGAGCACGGCAGCCGCGACCTGGACACCCAGCACCTGCTGCGCGCCGCGCTGTCCGCCGAGCCGACCCGGAGTCTG
CTCACCCGGGCGGGCGCGGACCCGGACTCGCTGGCGACGGAGATCGACGAGCGTTCCGGCCCGGTCCAGCACCCGCCGGG
CGAGGCCCCGCCGCCGACTTCGCTGTCCCTGACCCCGGCCGCCAAGCGGGCCCTGCTGGACGCGCACGACCTGGCCAGGA
CGCGCGGAGCCGGTTACATCGGCCCGGAGCACGTGCTCAGCGCCCTCGCCGCGAACCCCGACTCGGCGGCCGGGCACATC
CTGAACGCGGCCCGCTTCGCCCCGTCCGGCATGCCGCCCGAGGCCCCGGACGGGGCCCAGCCCAGGGCGGGCGTCGATCA
GCGGCCACGCGTCGACACCGGTACGCCCACTCTCGACAAGTACGGCCGCGACCTCACCGAACTGGCCCGCCAGGGCCGTG
TCGACCCGGTGATCGGGCGTGACGAGGAGATCGAGCAGACCGTCGAGGTGCTCTCCCGGCGCGGCAAGAACAACCCGGTG
CTGATCGGCGACGCGGGCGTGGGCAAGACCGCGATCGTGGAGGGCCTGGCCCAGAGGATCACCGACGGCGACGTGCCCGA
CGTGCTCAGCGGCCGCCGGGTCATCGCGCTGGACCTGGCGGGCGTGGTCGCCGGCACCCGCTACCGGGGGGACTTCGAGG
AGCGGCTCACCAACATCGTGGACGAGATCCGCGCGCACTCCGACCGGCTGATCGTGTTCATCGACGAGTTGCACACCGTC
GTGGGCGCCGGAGGCGGCGGCGAGGGCGGGTCCATGGACGCCGGGAACATCCTCAAGCCGGCCCTCGCCCGCGGCGAACT
GCACGTCGTGGGCGCGACCACGCTGGAGGAGTACCGCCGGATCGAGAAGGACGCGGCACTCTCCCGCCGCTTCCAGCCGA
TCCTGGTCCCCGAGCCGACGACCGCCGACGCGATCGAGATCCTGCGCGGCCTGCGCGACCGCTACGAGGCCCACCACCAG
GTCCGCTACAGCGACGAGGCGCTCGTCGCCGCCGTGGAGCTGTCCGACCGCTACCTCACCGACCGGCGCCTGCCGGACAA
GGCCATCGACCTGATCGACCAGGCGGGCGCCAGGGTACGACTGGGCGCCCGCTCCAAGGGCACGGACGTACGGGCCATGG
AGCGCGAGGTCGAGCAGCTGACCCGGGACAAGGACCAGGCGGTCGCCGACGAGAGCTACGAGCAGGCGACCGGGCTGCGT
GACCGGATCGTCGATCTGAAGCAGCGCATCGCGGACGCCTCCGGCGACGAGGAGGCCGACGAGGGCATCGACCTGACGGT
CACCGCCGAGGCCATCGCGGAGGTCGTGTCCCGGCAGACCGGCATCCCGGTGAGCAGCCTCACCGAGGAGGAGAAGGACC
GGCTGCTCGGCCTGGAGGAGCATCTGCACGAGCGGGTCGTCGGGCAGGACGAGGCGGTGCGCGTGGTCTCCGACGCGGTG
CTGCGCTCCCGGGCCGGACTCGCCAGCCCCGACCGGCCGATCGGCAGTTTCCTGTTCCTCGGCCCGACCGGGGTCGGCAA
GACCGAGCTGGCCCGGGCGCTCGCCGAGGCGCTGTTCGGCAGCGAGGAGCGCATGGTCCGCCTCGACATGAGCGAGTACC
AGGAACGCCACACGGTCAGCCGGCTGATCGGCGCCCCGCCCGGCTACGTCGGCCACGAGGAGGCCGGCCAGCTCACCGAG
GTGGTGCGCCGGCACCCGTACTCGCTGCTCCTGCTCGACGAGATCGAGAAGGCCCACCCGGACGTCTTCAACATCCTGCT
CCAGGTGCTGGACGACGGGCGGCTGACCGACTCCCAGGGCCGCACCGTGGACTTCACCAACGCGGTCATCGTGATGACCA
GCAATCTCGGCTCGGAGGCGATCGGCCGCGGCGGCGCCGGCATCGGGTTCGGCTCGGGCGACGAGGGGGCCGAGGAGGAG
GCGCGCAGCGAACGGATCCTGCGGCCGCTGCGCCAGCAGTTCCGGCCCGAGTTCCTCAACCGCATCGACGAGATCGTCGT
CTTCCGCCGGCTGACCCCCGAGCAGCTGGAGCGGATCACGAACCTGCTGCTGGACCGGACCCGCCGTCTGCTGCACGCCC
AGGGCGTCGCGGTCGAGTTCACCGGCGCGGCCGTCGACTGGCTCTCCGAGCGCGGCTACCAGCCCGAGTACGGCGCCCGC
CCGCTGCGCCGCACCATTCAGCGGGAGGTCGACAACCAGCTGTCCCGGCTGCTCCTGGACGGCCGGATCGGCGAGGGCGG
CCGGGTCACGGTGGACGTGGCGGACGGGCGGCTCGCCTTCCGCACGGAAGACCTGCCGCCCGCCCCCGAGTTGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
48.157 |
95.652 |
0.461 |
| clpC | Streptococcus pneumoniae D39 |
44.365 |
98.002 |
0.435 |
| clpC | Streptococcus pneumoniae TIGR4 |
44.365 |
98.002 |
0.435 |
| clpC | Streptococcus pneumoniae Rx1 |
44.365 |
98.002 |
0.435 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
44.994 |
95.065 |
0.428 |
| clpC | Streptococcus mutans UA159 |
42.874 |
98.12 |
0.421 |
| clpC | Streptococcus thermophilus LMD-9 |
46.887 |
88.719 |
0.416 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.225 |
88.719 |
0.41 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
50.146 |
80.611 |
0.404 |
| clpE | Streptococcus mutans UA159 |
52.875 |
73.561 |
0.389 |
| clpE | Streptococcus pneumoniae Rx1 |
50.481 |
73.325 |
0.37 |
| clpE | Streptococcus pneumoniae D39 |
50.481 |
73.325 |
0.37 |
| clpE | Streptococcus pneumoniae R6 |
50.481 |
73.325 |
0.37 |
| clpE | Streptococcus pneumoniae TIGR4 |
50.481 |
73.325 |
0.37 |