Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MON12_RS23440 Genome accession   NZ_CP093424
Coordinates   4512027..4512350 (+) Length   107 a.a.
NCBI ID   WP_000578877.1    Uniprot ID   A0A3P1BX61
Organism   Bacillus pacificus strain MP6     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4507027..4517350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON12_RS23425 (MON12_23425) - 4507540..4508925 (-) 1386 WP_074567594.1 aldehyde dehydrogenase -
  MON12_RS23430 (MON12_23430) inhA1 4509079..4511469 (-) 2391 WP_088106557.1 M6 family metalloprotease immune inhibitor InhA1 -
  MON12_RS23435 (MON12_23435) - 4511813..4511947 (+) 135 WP_000276218.1 anti-repressor SinI family protein -
  MON12_RS23440 (MON12_23440) sinR 4512027..4512350 (+) 324 WP_000578877.1 helix-turn-helix domain-containing protein Regulator
  MON12_RS23445 (MON12_23445) calY 4512434..4513027 (-) 594 WP_000053741.1 biofilm matrix protein CalY -
  MON12_RS23450 (MON12_23450) - 4513455..4514348 (-) 894 WP_014893201.1 DUF4047 domain-containing protein -
  MON12_RS23455 (MON12_23455) - 4514505..4515095 (-) 591 WP_000172845.1 TasA family protein -
  MON12_RS23460 (MON12_23460) sipW 4515156..4515725 (-) 570 WP_000767807.1 signal peptidase I SipW -
  MON12_RS23465 (MON12_23465) - 4515918..4517204 (-) 1287 WP_000247008.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12320.15 Da        Isoelectric Point: 8.5404

>NTDB_id=664634 MON12_RS23440 WP_000578877.1 4512027..4512350(+) (sinR) [Bacillus pacificus strain MP6]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=664634 MON12_RS23440 WP_000578877.1 4512027..4512350(+) (sinR) [Bacillus pacificus strain MP6]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCCGGCGTCTCCAAAGAACAGTTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P1BX61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692