Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MON12_RS22105 Genome accession   NZ_CP093424
Coordinates   4268476..4269078 (+) Length   200 a.a.
NCBI ID   WP_000155593.1    Uniprot ID   A0A2A7DG84
Organism   Bacillus pacificus strain MP6     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4263476..4274078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON12_RS22060 (MON12_22060) gpsB 4263877..4264212 (-) 336 WP_000622429.1 cell division regulator GpsB -
  MON12_RS22065 (MON12_22065) - 4264310..4264864 (-) 555 WP_000862921.1 DUF1273 domain-containing protein -
  MON12_RS22070 (MON12_22070) - 4264921..4265340 (-) 420 WP_000546263.1 CotD family spore coat protein -
  MON12_RS22075 (MON12_22075) - 4265496..4265963 (-) 468 WP_014893168.1 YppG family protein -
  MON12_RS22080 (MON12_22080) - 4266141..4266332 (+) 192 WP_000242661.1 YppF family protein -
  MON12_RS22085 (MON12_22085) - 4266359..4266703 (-) 345 WP_000872959.1 YppE family protein -
  MON12_RS22090 (MON12_22090) - 4266719..4266961 (-) 243 WP_001252039.1 hypothetical protein -
  MON12_RS22095 (MON12_22095) - 4267047..4267223 (+) 177 WP_001982922.1 hypothetical protein -
  MON12_RS22100 (MON12_22100) - 4267347..4268372 (-) 1026 WP_014893169.1 DUF2515 domain-containing protein -
  MON12_RS22105 (MON12_22105) recU 4268476..4269078 (+) 603 WP_000155593.1 Holliday junction resolvase RecU Machinery gene
  MON12_RS22110 (MON12_22110) - 4269144..4271861 (+) 2718 WP_088106570.1 PBP1A family penicillin-binding protein -
  MON12_RS22115 (MON12_22115) - 4271885..4272403 (-) 519 WP_014893171.1 YpoC family protein -
  MON12_RS22120 (MON12_22120) nth 4272407..4273054 (-) 648 WP_000933028.1 endonuclease III -
  MON12_RS22125 (MON12_22125) dnaD 4273070..4273777 (-) 708 WP_000728540.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23312.63 Da        Isoelectric Point: 9.5601

>NTDB_id=664632 MON12_RS22105 WP_000155593.1 4268476..4269078(+) (recU) [Bacillus pacificus strain MP6]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIVEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=664632 MON12_RS22105 WP_000155593.1 4268476..4269078(+) (recU) [Bacillus pacificus strain MP6]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACGAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAGCATATGAAGCAAGTAATCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGAAAATCGATTACGAAAGAAGAAATAGTAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7DG84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625