Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MON12_RS20145 Genome accession   NZ_CP093424
Coordinates   3880314..3880601 (-) Length   95 a.a.
NCBI ID   WP_000648331.1    Uniprot ID   A0A2A8KZX2
Organism   Bacillus pacificus strain MP6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3875314..3885601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON12_RS20115 (MON12_20115) - 3875470..3875817 (+) 348 WP_000426318.1 DUF4257 domain-containing protein -
  MON12_RS20120 (MON12_20120) - 3875902..3876126 (+) 225 WP_000162606.1 hypothetical protein -
  MON12_RS20125 (MON12_20125) - 3876314..3877489 (-) 1176 WP_000832304.1 MFS transporter -
  MON12_RS20130 (MON12_20130) - 3877659..3878594 (-) 936 WP_074567834.1 aldo/keto reductase -
  MON12_RS20135 (MON12_20135) - 3878702..3879010 (+) 309 WP_001259918.1 helix-turn-helix transcriptional regulator -
  MON12_RS20140 (MON12_20140) - 3879051..3880001 (-) 951 WP_001089044.1 serine protease -
  MON12_RS20145 (MON12_20145) abrB 3880314..3880601 (-) 288 WP_000648331.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MON12_RS20150 (MON12_20150) - 3880718..3882598 (-) 1881 WP_074567833.1 FtsX-like permease family protein -
  MON12_RS20155 (MON12_20155) nadE 3882870..3883688 (+) 819 WP_000174882.1 ammonia-dependent NAD(+) synthetase -
  MON12_RS20160 (MON12_20160) - 3883737..3884198 (-) 462 WP_074567832.1 NUDIX hydrolase -
  MON12_RS20165 (MON12_20165) - 3884230..3884427 (-) 198 WP_014893815.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.40 Da        Isoelectric Point: 6.3179

>NTDB_id=664631 MON12_RS20145 WP_000648331.1 3880314..3880601(-) (abrB) [Bacillus pacificus strain MP6]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=664631 MON12_RS20145 WP_000648331.1 3880314..3880601(-) (abrB) [Bacillus pacificus strain MP6]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTAATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATTAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516