Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MON12_RS11180 Genome accession   NZ_CP093424
Coordinates   2138473..2138907 (+) Length   144 a.a.
NCBI ID   WP_049111162.1    Uniprot ID   -
Organism   Bacillus pacificus strain MP6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2133473..2143907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON12_RS11160 (MON12_11160) - 2134209..2135372 (-) 1164 WP_049113003.1 aminotransferase A -
  MON12_RS11165 (MON12_11165) - 2135496..2135696 (-) 201 WP_000929285.1 hypothetical protein -
  MON12_RS11170 (MON12_11170) kinB 2136006..2137280 (+) 1275 WP_000420388.1 sporulation sensor histidine kinase KinB -
  MON12_RS11175 (MON12_11175) - 2137334..2138083 (-) 750 WP_000388461.1 DUF3967 domain-containing protein -
  MON12_RS11180 (MON12_11180) nucA/comI 2138473..2138907 (+) 435 WP_049111162.1 DNA-entry nuclease Machinery gene
  MON12_RS11185 (MON12_11185) comJ 2138943..2139332 (+) 390 WP_000424014.1 competence protein ComJ -
  MON12_RS11190 (MON12_11190) metE 2139370..2141658 (-) 2289 WP_001007593.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  MON12_RS11195 (MON12_11195) - 2142326..2142883 (-) 558 WP_000062077.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16028.41 Da        Isoelectric Point: 8.4331

>NTDB_id=664623 MON12_RS11180 WP_049111162.1 2138473..2138907(+) (nucA/comI) [Bacillus pacificus strain MP6]
MKQLKGIIISIIAILSIVVAMYEVLVPEETSIKKTNAYDQVLEFPKDRYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFDVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=664623 MON12_RS11180 WP_049111162.1 2138473..2138907(+) (nucA/comI) [Bacillus pacificus strain MP6]
ATGAAACAATTAAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTATTGTAGTAGCGATGTATGAAGTGCTTGTTCC
AGAGGAAACAAGTATTAAAAAAACAAATGCGTATGATCAAGTTCTAGAATTTCCGAAAGATCGATATCCAGAGACAGGGA
AACATATTACGGATGCTATAAAAGAAGGACATTCAGAAGTTTGTACAATCGACCGTGGTGGTGCTGCGGATAGAAGAAAA
TTATCGTTAGCTCCATACCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGCGGAAA
AGGAGCGCATATTGAATATATAAGTCCAGCCGATAACCGCGGAGCAGGCTCTTGGGTAGGAAATAAGTTAGATAAATACC
CAGATGGTACGCGTGTGAAATTTGACGTAAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

72.072

77.083

0.556