Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MON12_RS09690 Genome accession   NZ_CP093424
Coordinates   1878368..1879114 (+) Length   248 a.a.
NCBI ID   WP_000487010.1    Uniprot ID   Q81LT9
Organism   Bacillus pacificus strain MP6     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1873368..1884114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON12_RS09660 (MON12_09660) - 1873657..1875801 (+) 2145 WP_000946449.1 HD family phosphohydrolase -
  MON12_RS09665 (MON12_09665) ybeY 1875798..1876268 (+) 471 WP_000054691.1 rRNA maturation RNase YbeY -
  MON12_RS09670 (MON12_09670) - 1876265..1876618 (+) 354 WP_000715476.1 diacylglycerol kinase family protein -
  MON12_RS09675 (MON12_09675) - 1876718..1877116 (+) 399 WP_001086296.1 cytidine deaminase -
  MON12_RS09680 (MON12_09680) era 1877109..1878014 (+) 906 WP_001080241.1 GTPase Era -
  MON12_RS09685 (MON12_09685) - 1878191..1878334 (+) 144 WP_000883924.1 YqzL family protein -
  MON12_RS09690 (MON12_09690) recO 1878368..1879114 (+) 747 WP_000487010.1 DNA repair protein RecO Machinery gene
  MON12_RS09695 (MON12_09695) - 1879222..1879854 (+) 633 WP_000583759.1 helix-turn-helix transcriptional regulator -
  MON12_RS09700 (MON12_09700) - 1879884..1880696 (+) 813 WP_000368943.1 pyruvate, water dikinase regulatory protein -
  MON12_RS09705 (MON12_09705) dnaG 1881548..1883344 (+) 1797 WP_000528214.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28665.22 Da        Isoelectric Point: 8.0540

>NTDB_id=664619 MON12_RS09690 WP_000487010.1 1878368..1879114(+) (recO) [Bacillus pacificus strain MP6]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=664619 MON12_RS09690 WP_000487010.1 1878368..1879114(+) (recO) [Bacillus pacificus strain MP6]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGCCGGTTAGCATCTGTTTCGCAACTTATGA
CACATGGTCATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTAGGGAGGGCGGTTTTCTGTGCTCACGTCATGCTGAACAAGATCAGTATCGTATACCAGTGGG
GGAAGCCGTTCATAAATTATTGCGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGTA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81LT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552