Detailed information
Bioinformatically predicted
Overview
| Name | comFA | Type | Machinery gene |
| Locus tag | MON12_RS05310 | Genome accession | NZ_CP093424 |
| Coordinates | 1065700..1067049 (+) | Length | 449 a.a. |
| NCBI ID | WP_088106316.1 | Uniprot ID | A0A1Y5Z255 |
| Organism | Bacillus pacificus strain MP6 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1060700..1072049
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MON12_RS05290 (MON12_05290) | - | 1061776..1062411 (-) | 636 | WP_000926694.1 | YigZ family protein | - |
| MON12_RS05295 (MON12_05295) | - | 1062651..1063493 (+) | 843 | WP_000844764.1 | DegV family protein | - |
| MON12_RS05300 (MON12_05300) | - | 1063667..1063981 (+) | 315 | WP_000400857.1 | helix-turn-helix domain-containing protein | - |
| MON12_RS05305 (MON12_05305) | - | 1064128..1065573 (+) | 1446 | WP_041184798.1 | NlpC/P60 family protein | - |
| MON12_RS05310 (MON12_05310) | comFA | 1065700..1067049 (+) | 1350 | WP_088106316.1 | ATP-dependent helicase ComFA | Machinery gene |
| MON12_RS05315 (MON12_05315) | - | 1067049..1067753 (+) | 705 | WP_001998620.1 | ComF family protein | - |
| MON12_RS05320 (MON12_05320) | cspC | 1067880..1068077 (+) | 198 | WP_001162041.1 | cold shock protein CspC | - |
| MON12_RS05325 (MON12_05325) | hpf | 1068399..1068941 (+) | 543 | WP_000671190.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| MON12_RS05330 (MON12_05330) | secA | 1069217..1071724 (+) | 2508 | WP_000579366.1 | preprotein translocase subunit SecA | - |
Sequence
Protein
Download Length: 449 a.a. Molecular weight: 51083.73 Da Isoelectric Point: 9.9947
>NTDB_id=664609 MON12_RS05310 WP_088106316.1 1065700..1067049(+) (comFA) [Bacillus pacificus strain MP6]
MLAGKQLLLEELSSDLRRELSDLKKKGEVVCVQGITKKASKYICQRCGNIEQRLFASFLCKRCGKACAYCRKCITMGRVS
ECTVLVRGIHERNGDRELNPLQWNGTLSIGQELAAQGVKEAIKQKKSFFIWAVCGAGKTEMLFYGIEEALRKGERVCIAT
PRTDVVLELAPRLQEVFPSITVAALYGGSVDHKKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVRQAM
KEKAARIYLTATPDEKWKRNFRKGKQKGVIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMNLNKKYPIFL
FVPHVRYIEEISQLLKGLDNRIDGVHAEDSMRKEKVASFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVMYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID
MLAGKQLLLEELSSDLRRELSDLKKKGEVVCVQGITKKASKYICQRCGNIEQRLFASFLCKRCGKACAYCRKCITMGRVS
ECTVLVRGIHERNGDRELNPLQWNGTLSIGQELAAQGVKEAIKQKKSFFIWAVCGAGKTEMLFYGIEEALRKGERVCIAT
PRTDVVLELAPRLQEVFPSITVAALYGGSVDHKKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVRQAM
KEKAARIYLTATPDEKWKRNFRKGKQKGVIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMNLNKKYPIFL
FVPHVRYIEEISQLLKGLDNRIDGVHAEDSMRKEKVASFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVMYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID
Nucleotide
Download Length: 1350 bp
>NTDB_id=664609 MON12_RS05310 WP_088106316.1 1065700..1067049(+) (comFA) [Bacillus pacificus strain MP6]
ATGCTTGCTGGAAAACAGTTGCTATTAGAAGAACTCTCTTCAGATTTACGGAGAGAATTAAGTGATTTGAAAAAGAAGGG
AGAGGTTGTATGTGTACAAGGTATAACGAAGAAGGCTTCTAAATATATATGTCAGCGCTGCGGAAATATAGAGCAGCGGC
TATTTGCATCATTTTTATGTAAAAGGTGCGGTAAAGCATGCGCGTATTGCCGGAAGTGTATCACGATGGGGAGAGTTAGT
GAATGTACTGTACTTGTTCGCGGGATTCATGAAAGAAACGGGGACAGGGAGCTAAATCCATTACAGTGGAATGGGACTTT
ATCGATTGGTCAGGAGTTGGCGGCGCAAGGGGTTAAAGAAGCGATTAAGCAGAAAAAATCTTTTTTTATTTGGGCTGTGT
GCGGGGCTGGAAAAACAGAAATGTTATTTTACGGTATAGAAGAGGCGCTTCGAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGGACGGACGTTGTACTGGAATTAGCGCCGAGATTACAAGAAGTGTTTCCAAGTATAACTGTAGCTGCTTTATACGG
AGGGAGTGTAGATCATAAAAAAGATGCAGCGTTAGTCGTTGCAACGACTCACCAACTGTTACGTTACTATAGAGCGTTTC
ATGTGATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCAGATCAAATGTTACAGTATGCAGTTAGGCAAGCAATG
AAAGAGAAAGCAGCGCGTATTTATTTAACTGCAACCCCTGATGAGAAGTGGAAGCGTAATTTTAGAAAGGGGAAACAAAA
AGGTGTTATTGTGTCAGGACGATACCATCGTCACCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGAAATTGGAAGAAAA
GCCTCCATCATAAAAAAATTCCTCGCGTGTTACTACAATGGTTAAAAATGAACTTAAACAAAAAGTATCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAAATAAGTCAGTTGTTGAAAGGGTTGGATAATAGAATAGATGGCGTGCATGC
AGAAGATTCGATGAGAAAAGAAAAAGTAGCATCTTTCAGAAAGGGAGACATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGAGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGAGCTGAAGAAGAAATTTTTTCAGAGAGTGCGCTCGTA
CAAATTGCAGGCCGAGCGGGGCGTAGTTTTGAAGAGCCATATGGTGAGGTTATGTATTTTCATTACGGTAAGACAGAGGC
AATGGTACGCGCGAAAAAACATATTCAAAGTATGAACAAAAATGCGAAAGAACAAGGATTGATCGATTAA
ATGCTTGCTGGAAAACAGTTGCTATTAGAAGAACTCTCTTCAGATTTACGGAGAGAATTAAGTGATTTGAAAAAGAAGGG
AGAGGTTGTATGTGTACAAGGTATAACGAAGAAGGCTTCTAAATATATATGTCAGCGCTGCGGAAATATAGAGCAGCGGC
TATTTGCATCATTTTTATGTAAAAGGTGCGGTAAAGCATGCGCGTATTGCCGGAAGTGTATCACGATGGGGAGAGTTAGT
GAATGTACTGTACTTGTTCGCGGGATTCATGAAAGAAACGGGGACAGGGAGCTAAATCCATTACAGTGGAATGGGACTTT
ATCGATTGGTCAGGAGTTGGCGGCGCAAGGGGTTAAAGAAGCGATTAAGCAGAAAAAATCTTTTTTTATTTGGGCTGTGT
GCGGGGCTGGAAAAACAGAAATGTTATTTTACGGTATAGAAGAGGCGCTTCGAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGGACGGACGTTGTACTGGAATTAGCGCCGAGATTACAAGAAGTGTTTCCAAGTATAACTGTAGCTGCTTTATACGG
AGGGAGTGTAGATCATAAAAAAGATGCAGCGTTAGTCGTTGCAACGACTCACCAACTGTTACGTTACTATAGAGCGTTTC
ATGTGATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCAGATCAAATGTTACAGTATGCAGTTAGGCAAGCAATG
AAAGAGAAAGCAGCGCGTATTTATTTAACTGCAACCCCTGATGAGAAGTGGAAGCGTAATTTTAGAAAGGGGAAACAAAA
AGGTGTTATTGTGTCAGGACGATACCATCGTCACCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGAAATTGGAAGAAAA
GCCTCCATCATAAAAAAATTCCTCGCGTGTTACTACAATGGTTAAAAATGAACTTAAACAAAAAGTATCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAAATAAGTCAGTTGTTGAAAGGGTTGGATAATAGAATAGATGGCGTGCATGC
AGAAGATTCGATGAGAAAAGAAAAAGTAGCATCTTTCAGAAAGGGAGACATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGAGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGAGCTGAAGAAGAAATTTTTTCAGAGAGTGCGCTCGTA
CAAATTGCAGGCCGAGCGGGGCGTAGTTTTGAAGAGCCATATGGTGAGGTTATGTATTTTCATTACGGTAAGACAGAGGC
AATGGTACGCGCGAAAAAACATATTCAAAGTATGAACAAAAATGCGAAAGAACAAGGATTGATCGATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFA | Bacillus subtilis subsp. subtilis str. 168 |
50.679 |
98.441 |
0.499 |
| comFA | Latilactobacillus sakei subsp. sakei 23K |
40 |
90.2 |
0.361 |