Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MON12_RS03590 Genome accession   NZ_CP093424
Coordinates   702314..702598 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus pacificus strain MP6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 697314..707598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON12_RS03575 (MON12_03575) rnmV 698110..698667 (-) 558 WP_000692830.1 ribonuclease M5 -
  MON12_RS03580 (MON12_03580) - 698881..699648 (-) 768 WP_000895848.1 TatD family hydrolase -
  MON12_RS03585 (MON12_03585) metG 699814..701796 (-) 1983 WP_088106323.1 methionine--tRNA ligase -
  MON12_RS03590 (MON12_03590) abrB 702314..702598 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MON12_RS03595 (MON12_03595) rsmI 702619..703494 (-) 876 WP_000267806.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MON12_RS03600 (MON12_03600) - 703463..703753 (-) 291 WP_000414339.1 GIY-YIG nuclease family protein -
  MON12_RS03605 (MON12_03605) - 703740..704480 (-) 741 WP_014893383.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  MON12_RS03610 (MON12_03610) yabA 704601..704951 (-) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  MON12_RS03615 (MON12_03615) - 704966..705793 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  MON12_RS03620 (MON12_03620) holB 705799..706782 (-) 984 WP_000169574.1 DNA polymerase III subunit delta' -
  MON12_RS03625 (MON12_03625) tmk 706818..707444 (-) 627 WP_000677230.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=664601 MON12_RS03590 WP_000843036.1 702314..702598(+) (abrB) [Bacillus pacificus strain MP6]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=664601 MON12_RS03590 WP_000843036.1 702314..702598(+) (abrB) [Bacillus pacificus strain MP6]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCGATTGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAGCTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851