Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpC   Type   Regulator
Locus tag   MON10_RS24235 Genome accession   NZ_CP093423
Coordinates   4343874..4346474 (-) Length   866 a.a.
NCBI ID   WP_175251351.1    Uniprot ID   -
Organism   Bacillus paranthracis strain SL1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context


Location: 4338874..4351474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON10_RS24210 (MON10_24210) fabH 4340129..4341061 (-) 933 WP_001100540.1 beta-ketoacyl-ACP synthase III -
  MON10_RS24215 (MON10_24215) comZ 4341631..4341807 (-) 177 WP_009879752.1 ComZ family protein Regulator
  MON10_RS24220 (MON10_24220) - 4341861..4342733 (-) 873 WP_000486161.1 NAD(P)-dependent oxidoreductase -
  MON10_RS24225 (MON10_24225) - 4342763..4343497 (-) 735 WP_000028698.1 hydrolase -
  MON10_RS24230 (MON10_24230) - 4343654..4343836 (+) 183 WP_001211114.1 YjzD family protein -
  MON10_RS24235 (MON10_24235) clpC 4343874..4346474 (-) 2601 WP_175251351.1 ATP-dependent chaperone ClpB Regulator
  MON10_RS24240 (MON10_24240) - 4346686..4346865 (-) 180 WP_000531421.1 YjzC family protein -
  MON10_RS24245 (MON10_24245) - 4347358..4348167 (+) 810 WP_001041235.1 Cof-type HAD-IIB family hydrolase -
  MON10_RS24250 (MON10_24250) - 4348273..4348413 (+) 141 WP_000516816.1 hypothetical protein -
  MON10_RS24255 (MON10_24255) - 4348414..4348611 (+) 198 WP_000527400.1 DUF3813 domain-containing protein -
  MON10_RS24260 (MON10_24260) - 4348637..4349494 (-) 858 WP_000364452.1 YitT family protein -
  MON10_RS24265 (MON10_24265) - 4349595..4349726 (+) 132 WP_001120845.1 DUF3941 domain-containing protein -
  MON10_RS24270 (MON10_24270) prsA 4349856..4350713 (+) 858 WP_254232292.1 peptidylprolyl isomerase PrsA -

Sequence


Protein


Download         Length: 866 a.a.        Molecular weight: 97557.64 Da        Isoelectric Point: 5.1938

>NTDB_id=664591 MON10_RS24235 WP_175251351.1 4343874..4346474(-) (clpC) [Bacillus paranthracis strain SL1]
MDLDQFTMKMQEAIMSAQSLAVSHHHQEVDTVHLLFTLLEEQDGLAVRIFQKMNVDIEALKQGAENLIKKKPSVTGSGAE
AGKLYITGALQQLLVRAGKEAEKLQDDYISVEHVLLAFTEEKGDINQLFTRFHITKDNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKEKDFGSQERLKTLQRELSDLKEVASSMRAKWEKEKEDIHKVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLDGLGEDGSIKEESRELVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHIT
VQLTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVENNELVVHVK

Nucleotide


Download         Length: 2601 bp        

>NTDB_id=664591 MON10_RS24235 WP_175251351.1 4343874..4346474(-) (clpC) [Bacillus paranthracis strain SL1]
ATGGACTTAGATCAATTTACAATGAAAATGCAAGAAGCGATTATGAGTGCCCAATCTTTAGCGGTATCTCATCATCATCA
AGAAGTAGATACTGTTCATCTCTTGTTTACATTATTAGAAGAGCAAGATGGGTTAGCAGTACGTATTTTTCAAAAAATGA
ATGTCGATATAGAAGCGTTAAAACAAGGCGCCGAAAATTTAATTAAGAAAAAGCCTTCCGTAACGGGGAGCGGTGCAGAA
GCGGGTAAATTATATATAACAGGTGCCCTGCAACAACTACTTGTAAGAGCAGGAAAAGAAGCAGAGAAATTGCAAGATGA
TTACATTTCAGTTGAACATGTATTACTTGCTTTTACTGAAGAAAAAGGCGATATAAACCAATTATTTACAAGATTTCATA
TTACGAAAGATAACTTACTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACTAGTCAAAATCCAGAAGCAACT
TATGAAGCGTTAGAAAAATATGGTCGTGATTTAGTGGCGGAAGTAAGAGCAGGGAAAATTGACCCTGTTATTGGCCGCGA
TAGTGAAATTCGCCGCGTAATCCGTATTCTTTCACGTAAAACGAAAAACAACCCGGTTTTAATTGGGGAACCGGGTGTAG
GTAAAACAGCAATCGTTGAAGGGTTAGCACAGCGTATTGTGAAAAAGGACGTACCAGAAGGATTAAAAGATAGAACAATT
TTTGCGTTAGATATGAGTGCGCTTGTAGCCGGTGCGAAATTCCGCGGTGAGTTTGAGGAGCGTCTCCAAGCTGTATTAAA
TGAAATTAAAAAGAGTGAAGGTCGTATTTTACTATTCATTGATGAACTTCACACAATCGTCGGCGCTGGTAAAACAGAAG
GCGCAATGGATGCAGGAAATATGTTAAAACCGATGCTTGCGCGTGGTGAACTGCATTGTATCGGGGCGACGACGTTAGAT
GAATATCGTAAATATATTGAGAAAGATCCAGCGCTAGAAAGACGTTTCCAACAAGTATTAGCAGAAGAACCAACTGTTGA
AGATACAATTTCCATTTTACGTGGTTTAAAAGAGCGCTTTGAAATTTATCACGGTGTAAATATTCATGACCGCGCGATTG
TAGCAGCATCAGTTTTATCAGATCGATATATTTCGGACCGTTTCTTACCGGATAAAGCAATTGATCTTGTCGATGAGGCT
TGTGCAACAATTCGTACAGAAATCGATTCTATGCCGACAGAATTAGATGAAGTAACGCGCCGCATTATGCAGCTGGAAAT
TGAAGAAGCGGCTCTTGGAAAAGAAAAGGACTTTGGTAGCCAAGAACGTCTAAAAACGTTGCAACGTGAATTATCGGATT
TAAAAGAAGTGGCAAGTAGCATGAGAGCGAAATGGGAGAAAGAAAAAGAAGATATTCACAAAGTGCGTGACTTACGTGAA
CATTTAGAGCGTCTGCGCCGTGAATTAGAAGAAGCAGAAGGGAATTACGATTTAAATAAAGCAGCGGAACTTCGCCATGG
AAAAATTCCTGCAATTGAAAAAGAGTTAAAAGAAGCAGAAGAAATGGGTGCGCATAATAAACAAGAAAATCGTTTATTAC
GTGAGGAAGTAAGTGAAGAAGAAATTGCTGATATTGTTTCACGTTGGACTGGTATTCCTGTTGCAAAACTCGTTGAAGGT
GAACGCGAGAAATTACTACGTTTAGAGCAAATTTTATCAGAGCGTGTCATCGGACAAGAAGAAGCAGTAAGCTTAGTATC
AGACGCAGTTCTTCGTGCACGCGCAGGTATTAAAGACCCGAACCGTCCGATTGGTTCCTTCATTTTCTTAGGACCTACTG
GTGTTGGTAAAACAGAACTTGCAAAAACGTTAGCGCAGTCATTATTTGATAGTGAAGAACAAATGATTCGTATCGATATG
TCTGAGTATATGGAGAAACACGCTGTGTCACGCTTAATTGGTGCGCCTCCTGGGTATGTTGGATATGAAGAGGGCGGTCA
ATTAACAGAAGCGGTAAGACGTAAACCGTATTCGGTTATTTTATTAGACGAAATCGAAAAAGCACATCCAGAAGTATTCA
ACATTTTATTACAAATGTTAGATGATGGTCGCATTACAGATTCGCAAGGACGTACAGTAGACTTTAAAAACACGGTTATT
ATTATGACTTCAAATATTGGATCTGCTCATTTATTAGATGGATTAGGAGAAGATGGCTCCATTAAAGAAGAATCAAGAGA
ACTTGTCATGGGGCAATTAAGAGGACATTTCCGACCAGAGTTTTTAAATCGTGTCGACGAAATTATTTTATTCAAACCTC
TTACAACGAATGAAATTAAAGGTATTGTTGATAAAATTGTAAAAGAATTACAAGGCCGTTTAGCTGACCGTCATATTACG
GTACAATTAACAGACGCAGCGAAAGAGTTTGTTGTCGAAGCTGGCTTCGATCCGATGTACGGAGCTCGTCCGTTAAAACG
ATATGTACAGCGTCAAGTTGAGACGAAATTAGCGAGAGAATTAATTGCAGGAACGATTACTGATAATAGTCACGTAGTTG
TTGATGTAGAAAATAACGAATTAGTCGTTCATGTGAAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Bacillus subtilis subsp. subtilis str. 168

47.771

100

0.483

  clpC Lactococcus lactis subsp. cremoris KW2

47.265

82.333

0.389