Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MON10_RS23715 Genome accession   NZ_CP093423
Coordinates   4247225..4247548 (+) Length   107 a.a.
NCBI ID   WP_000578887.1    Uniprot ID   -
Organism   Bacillus paranthracis strain SL1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4242225..4252548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON10_RS23700 (MON10_23700) - 4242743..4244110 (-) 1368 WP_000116810.1 aldehyde dehydrogenase -
  MON10_RS23705 (MON10_23705) inhA1 4244282..4246669 (-) 2388 WP_001035931.1 M6 family metalloprotease immune inhibitor InhA1 -
  MON10_RS23710 (MON10_23710) - 4247011..4247145 (+) 135 WP_000276217.1 anti-repressor SinI family protein -
  MON10_RS23715 (MON10_23715) sinR 4247225..4247548 (+) 324 WP_000578887.1 helix-turn-helix domain-containing protein Regulator
  MON10_RS23720 (MON10_23720) calY 4247623..4248213 (-) 591 WP_000053726.1 biofilm matrix protein CalY -
  MON10_RS23725 (MON10_23725) - 4248638..4249447 (-) 810 WP_048538903.1 DUF4047 domain-containing protein -
  MON10_RS23730 (MON10_23730) - 4249605..4250195 (-) 591 WP_000172846.1 TasA family protein -
  MON10_RS23735 (MON10_23735) sipW 4250256..4250825 (-) 570 WP_000767807.1 signal peptidase I SipW -
  MON10_RS23740 (MON10_23740) - 4251020..4252306 (-) 1287 WP_254232279.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12387.20 Da        Isoelectric Point: 8.5748

>NTDB_id=664585 MON10_RS23715 WP_000578887.1 4247225..4247548(+) (sinR) [Bacillus paranthracis strain SL1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTRENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=664585 MON10_RS23715 WP_000578887.1 4247225..4247548(+) (sinR) [Bacillus paranthracis strain SL1]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAGGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGCGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692