Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   LBWT_RS02630 Genome accession   NZ_AP014638
Coordinates   565076..567715 (+) Length   879 a.a.
NCBI ID   WP_017290866.1    Uniprot ID   -
Organism   Leptolyngbya boryana IAM M-101     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 560076..572715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBWT_RS02610 (LBDG_RS02625) hmpF 560626..562407 (-) 1782 WP_017290871.1 pilus motility taxis protein HmpF -
  LBWT_RS02615 (LBDG_RS02630) - 562552..563784 (+) 1233 WP_017290870.1 response regulator -
  LBWT_RS02620 (LBDG_RS02635) pilH 563913..564278 (+) 366 WP_017290869.1 response regulator transcription factor Machinery gene
  LBWT_RS02625 (LBDG_RS02640) - 564290..564820 (+) 531 WP_017290868.1 chemotaxis protein CheW -
  LBWT_RS02630 (LBDG_RS02650) pilJ 565076..567715 (+) 2640 WP_017290866.1 methyl-accepting chemotaxis protein Machinery gene

Sequence

Protein


Download         Length: 879 a.a.        Molecular weight: 94289.08 Da        Isoelectric Point: 3.9936

>NTDB_id=66458 LBWT_RS02630 WP_017290866.1 565076..567715(+) (pilJ) [Leptolyngbya boryana IAM M-101]
MARGNEFAQEYQQAERAYMQGKYEEAAGIVDRLVDNYPQDPSARLLRGHIYCYGLQKYDVAQEQYQSVLDLTSDPEFVDY
ANSGLAYAGQFSDSSADSFADTSLETDYSGFDESAYLSQESANSLDDFAFDDDFKATTEESSSFGNPFGAQHNGDGSKVG
ASIGLDDPFAVSASSDAPFSMQDESVVSQDFSNALDDFDQVFASDDEPSHGSMSTVSTDPGMSQGDMAVPISRVTSRDTS
EETLFMAAPGFYDEQAAAAFEMPTEQNKFAPIYDEPQNGSRNHPVSTPGNQSNVDFLDDFEDFDDLGNLSDFDLSEDSAG
FTSPSIGSAFGFNSNMSAASDSAEVDFGQGSDFAPSNRDGSAFQDDELFSMSSTTEQVPSFTTQLDVPSSEPTPTVEQGW
LAPLENASFATKQLIAAGAAGIVSAVAVAVVSFVASNQAAQNNNGAVVSQLRTTGIVMALASGVCGGGAAFAVGQMTARH
MKRSTDDLKAQFDSVCQGNLQARATVFAEDELGQLSTNFNQMTRVILTTTSEAQRKAEEQEQAKEDLQRQVIRLLDDVEG
AARGDLTVQAEVTADVLGAVADSFNLTIQNLREIVQQVKQAARQVSKGSTENEMFARSLSSDALRQAEELAVTLNSVQVM
TNSIQRVAESAREAEEVARTASSTALKGGEAVERTVAGILEIRETVAETTRKVKRLAESSQEISKIVALISQIASRTNLL
ALNASIEAARAGEAGRGFAIVADEVRQLADRAAKASKEIEQIVLQIQGETGSVMTAMEEGTQQVIEGTRLAEQAKRSLED
IIQVSSVIDTLVRSITADTVEQTETSRNVAQVMQSVELTAQETSQEAQRVSGSLQNLVGVARDLLTSVERFRVETVDRK

Nucleotide


Download         Length: 2640 bp        

>NTDB_id=66458 LBWT_RS02630 WP_017290866.1 565076..567715(+) (pilJ) [Leptolyngbya boryana IAM M-101]
ATGGCACGAGGAAATGAATTCGCTCAAGAATATCAGCAGGCAGAGCGCGCCTATATGCAGGGCAAGTATGAAGAAGCGGC
TGGCATCGTCGATCGCTTAGTTGATAATTATCCTCAAGATCCTAGTGCTCGACTCTTACGGGGTCACATCTACTGCTATG
GCTTACAAAAGTATGATGTGGCGCAAGAGCAATACCAGTCTGTTCTCGATCTCACCTCTGATCCAGAATTTGTTGATTAC
GCGAATAGTGGTCTGGCTTATGCGGGTCAATTTTCAGATAGCTCTGCCGATAGCTTTGCAGATACCAGTCTAGAAACAGA
TTATTCAGGATTTGACGAATCTGCTTATCTATCACAAGAATCTGCAAATTCACTGGATGACTTCGCATTCGATGACGATT
TCAAAGCAACTACAGAAGAATCGTCGTCTTTTGGAAATCCCTTTGGCGCACAGCACAACGGTGATGGTTCAAAAGTTGGA
GCTTCGATCGGGTTAGATGATCCGTTTGCAGTTTCAGCTTCATCGGATGCGCCGTTCTCAATGCAGGACGAATCCGTAGT
GAGCCAAGACTTCTCGAATGCACTGGATGATTTTGATCAAGTCTTTGCCTCAGATGATGAGCCTTCGCACGGCAGCATGT
CTACAGTTTCAACTGATCCAGGCATGTCCCAGGGAGACATGGCTGTTCCAATCAGTCGCGTTACAAGTCGGGATACCAGT
GAAGAAACTTTGTTTATGGCGGCTCCGGGCTTCTATGATGAGCAAGCTGCAGCTGCATTCGAGATGCCAACTGAGCAGAA
CAAATTTGCGCCGATCTACGATGAGCCGCAAAACGGCAGTCGAAATCATCCGGTCTCAACGCCAGGCAATCAAAGCAATG
TTGATTTCCTAGACGATTTTGAAGACTTTGATGATCTGGGAAATCTTTCAGATTTTGATCTATCTGAGGATTCAGCCGGA
TTTACCAGTCCTTCGATTGGAAGTGCGTTTGGATTCAATTCAAATATGTCCGCTGCTTCGGACAGCGCTGAAGTTGATTT
TGGGCAAGGTTCGGATTTTGCACCTTCTAATAGAGATGGTTCAGCCTTCCAGGATGATGAACTTTTCAGCATGTCCAGCA
CAACTGAACAGGTCCCAAGTTTTACGACTCAATTAGATGTTCCAAGTTCAGAACCGACTCCGACTGTTGAACAAGGTTGG
TTAGCTCCACTTGAGAATGCTTCATTCGCAACTAAGCAGTTGATTGCTGCTGGAGCTGCTGGGATTGTCTCAGCAGTAGC
GGTTGCAGTGGTTAGCTTTGTCGCTTCCAATCAGGCGGCTCAAAACAATAATGGAGCTGTTGTTTCTCAGCTGCGCACAA
CTGGGATTGTGATGGCTCTGGCGAGTGGTGTTTGCGGTGGTGGTGCAGCATTTGCGGTCGGTCAAATGACTGCTCGGCAT
ATGAAGCGATCGACCGATGACCTCAAAGCCCAATTTGATTCGGTCTGTCAGGGCAATCTTCAAGCACGGGCTACTGTTTT
TGCAGAAGATGAGCTTGGTCAACTCTCGACCAACTTTAACCAAATGACTCGTGTGATTCTGACTACGACCAGCGAGGCGC
AACGTAAGGCAGAAGAACAAGAGCAAGCGAAAGAAGATTTACAGCGCCAGGTGATTCGCTTACTCGATGATGTAGAAGGT
GCGGCTCGCGGTGATTTGACGGTACAAGCAGAGGTTACTGCTGACGTCCTTGGAGCGGTTGCTGACTCATTCAACTTAAC
CATTCAGAACCTGCGTGAAATCGTTCAACAGGTAAAACAAGCTGCACGTCAGGTCAGTAAGGGTTCCACGGAAAATGAGA
TGTTCGCTCGCAGTTTGTCTTCTGACGCATTGCGTCAAGCTGAAGAACTCGCGGTAACCCTGAACTCTGTACAGGTGATG
ACCAACTCAATTCAGCGTGTAGCAGAGAGCGCTCGTGAAGCCGAAGAAGTCGCAAGAACTGCGTCTTCGACTGCCTTGAA
GGGCGGTGAAGCGGTAGAACGTACTGTGGCTGGTATTCTCGAAATTCGAGAAACAGTGGCAGAAACGACGCGTAAAGTTA
AACGACTCGCGGAATCTTCGCAAGAGATTTCTAAGATTGTTGCCTTAATTTCGCAGATTGCGTCTCGAACCAATCTTCTT
GCATTGAACGCCAGTATTGAGGCAGCAAGAGCAGGAGAAGCAGGACGAGGATTTGCAATCGTTGCAGATGAAGTTCGACA
GTTAGCAGACCGAGCCGCAAAAGCGTCGAAAGAGATTGAACAAATCGTATTACAGATTCAAGGTGAAACTGGATCAGTAA
TGACCGCGATGGAAGAAGGAACTCAACAAGTTATCGAGGGAACCCGGCTCGCTGAACAAGCGAAGCGCTCACTCGAAGAC
ATTATTCAAGTATCGAGCGTCATTGACACACTTGTGAGATCAATTACCGCCGATACGGTTGAGCAGACCGAAACTTCACG
GAATGTCGCTCAAGTGATGCAATCCGTGGAATTGACTGCACAAGAGACTTCGCAAGAAGCTCAACGCGTGTCAGGGTCAC
TGCAAAACCTAGTAGGGGTTGCGCGTGACTTGCTAACGTCGGTAGAACGATTCCGGGTAGAAACTGTTGATCGGAAGTAA

Domains

Predicted by InterproScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(656-836)

HAMP domain (HAMP)

(477-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

46.302

100

0.491

Multiple sequence alignment