Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   MON10_RS09495 Genome accession   NZ_CP093423
Coordinates   1519262..1520305 (+) Length   347 a.a.
NCBI ID   WP_001013206.1    Uniprot ID   -
Organism   Bacillus paranthracis strain SL1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1514262..1525305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON10_RS09460 (MON10_09460) - 1514516..1515004 (+) 489 WP_000764271.1 hypothetical protein -
  MON10_RS09465 (MON10_09465) - 1515041..1515352 (-) 312 WP_001093243.1 hypothetical protein -
  MON10_RS09470 (MON10_09470) - 1515606..1515821 (+) 216 WP_001008331.1 DUF3912 family protein -
  MON10_RS09475 (MON10_09475) - 1515909..1516316 (+) 408 WP_254232587.1 hypothetical protein -
  MON10_RS09480 (MON10_09480) - 1516491..1517885 (-) 1395 WP_254232588.1 L-cystine transporter -
  MON10_RS09485 (MON10_09485) - 1517993..1518235 (-) 243 WP_000440719.1 DUF2626 domain-containing protein -
  MON10_RS09490 (MON10_09490) - 1518361..1519056 (-) 696 WP_000434105.1 metalloregulator ArsR/SmtB family transcription factor -
  MON10_RS09495 (MON10_09495) comGA 1519262..1520305 (+) 1044 WP_001013206.1 competence protein ComGA Machinery gene
  MON10_RS09500 (MON10_09500) comGB 1520298..1521329 (+) 1032 Protein_1525 competence type IV pilus assembly protein ComGB -
  MON10_RS09505 (MON10_09505) comGC 1521341..1521640 (+) 300 WP_001178694.1 competence type IV pilus major pilin ComGC -
  MON10_RS09510 (MON10_09510) comGD 1521637..1522092 (+) 456 WP_000810387.1 comG operon protein ComGD -
  MON10_RS09515 (MON10_09515) comGE 1522085..1522387 (+) 303 WP_000829518.1 competence type IV pilus minor pilin ComGE -
  MON10_RS09520 (MON10_09520) comGF 1522357..1522827 (+) 471 WP_000923058.1 competence type IV pilus minor pilin ComGF -
  MON10_RS09525 (MON10_09525) comGG 1522824..1523195 (+) 372 WP_000595194.1 competence type IV pilus minor pilin ComGG -
  MON10_RS09530 (MON10_09530) - 1523371..1524021 (+) 651 WP_000183848.1 2OG-Fe(II) oxygenase -
  MON10_RS09535 (MON10_09535) - 1524141..1524638 (+) 498 WP_001993817.1 shikimate kinase -
  MON10_RS09540 (MON10_09540) - 1524677..1524877 (+) 201 WP_000106079.1 YqzE family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39361.84 Da        Isoelectric Point: 9.1826

>NTDB_id=664571 MON10_RS09495 WP_001013206.1 1519262..1520305(+) (comGA) [Bacillus paranthracis strain SL1]
MNGIESFANTILKEACRVQASDLHIVPRKKDVVIQLRIGKDLMTKQYIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLHYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTVCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLESSLRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=664571 MON10_RS09495 WP_001013206.1 1519262..1520305(+) (comGA) [Bacillus paranthracis strain SL1]
ATGAATGGAATTGAAAGCTTTGCGAATACGATTTTGAAAGAGGCGTGTAGGGTACAAGCTTCGGATTTACATATTGTGCC
CCGGAAGAAGGATGTAGTGATTCAACTACGCATAGGGAAAGATTTAATGACGAAACAATACATTGAAAAGGAATTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCCATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCACTGTAT
TTACAAATGGATGGACAGGAAGTGTATTTACGTCTTTCCACGCTTCCAACTGTATATCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
ATTATTCCCATGGGTTACTCGTATTTACTGGACCGACTGGATCGGGGAAGACAACAACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGCCGCATCGTTACACTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCGGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTGG
GTGAAATTCGTGATGAAGAAACAGCAAAAATCGCTATAAGAGCAAGTTTGACTGGCCATTTAGTAATGACGACACTGCAT
ACGAATGATGCGAAAGGAGCAATACTTCGGTTTATGGACTTTGGCATAACAAGGCAAGAGATTGAACAATCTTTATTGGC
TATAGCTGCACAGCGACTTGTTGAATTGAAGTGTCCGTTTTGTAAAAGAAAGTGCTCAACTGTATGTAAATCAATGAGGC
AAGTAAGGCAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACGTACAAGCATGAGACATTAGAGTCTTCGTTGCGAAAAGGATACGCTTTAGGATTTTTAGAAGAGGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

58.501

100

0.585
  pilB Vibrio campbellii strain DS40M4

35.977

100

0.366