Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MON10_RS02845 Genome accession   NZ_CP093423
Coordinates   243401..243685 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus paranthracis strain SL1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 238401..248685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON10_RS02830 (MON10_02830) rnmV 239192..239749 (-) 558 WP_000692830.1 ribonuclease M5 -
  MON10_RS02835 (MON10_02835) - 239967..240734 (-) 768 WP_000895835.1 TatD family hydrolase -
  MON10_RS02840 (MON10_02840) metG 240901..242883 (-) 1983 WP_000159679.1 methionine--tRNA ligase -
  MON10_RS02845 (MON10_02845) abrB 243401..243685 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MON10_RS02850 (MON10_02850) rsmI 243706..244581 (-) 876 WP_000267830.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MON10_RS02855 (MON10_02855) - 244550..244840 (-) 291 WP_000414340.1 GIY-YIG nuclease family protein -
  MON10_RS02860 (MON10_02860) - 244827..245567 (-) 741 WP_254232451.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  MON10_RS02865 (MON10_02865) yabA 245688..246038 (-) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  MON10_RS02870 (MON10_02870) - 246053..246880 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  MON10_RS02875 (MON10_02875) holB 246886..247869 (-) 984 WP_001993804.1 DNA polymerase III subunit delta' -
  MON10_RS02880 (MON10_02880) tmk 247905..248531 (-) 627 WP_000677231.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=664552 MON10_RS02845 WP_000843036.1 243401..243685(+) (abrB) [Bacillus paranthracis strain SL1]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=664552 MON10_RS02845 WP_000843036.1 243401..243685(+) (abrB) [Bacillus paranthracis strain SL1]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAGCTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851