Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG596_RS25795 Genome accession   NZ_CP108654
Coordinates   5772135..5773127 (+) Length   330 a.a.
NCBI ID   WP_405390954.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01102     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5767135..5778127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG596_RS25780 (OG596_25720) - 5767790..5768521 (-) 732 WP_405390952.1 DUF305 domain-containing protein -
  OG596_RS25785 (OG596_25725) - 5768542..5769876 (-) 1335 WP_405390953.1 DUF1996 domain-containing protein -
  OG596_RS25790 (OG596_25730) - 5770088..5771807 (-) 1720 Protein_5076 discoidin domain-containing protein -
  OG596_RS25795 (OG596_25735) cytR 5772135..5773127 (+) 993 WP_405390954.1 LacI family DNA-binding transcriptional regulator Regulator
  OG596_RS25800 (OG596_25740) - 5773162..5773650 (+) 489 WP_405390955.1 hypothetical protein -
  OG596_RS25805 (OG596_25745) - 5773650..5774162 (+) 513 WP_405390956.1 flavin reductase family protein -
  OG596_RS25810 (OG596_25750) - 5774327..5775043 (+) 717 WP_405390957.1 NADPH-dependent F420 reductase -
  OG596_RS25815 (OG596_25755) - 5775199..5775864 (-) 666 WP_405390958.1 NADPH-dependent F420 reductase -
  OG596_RS25820 (OG596_25760) - 5775973..5776593 (-) 621 WP_405390959.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35123.08 Da        Isoelectric Point: 6.3570

>NTDB_id=664535 OG596_RS25795 WP_405390954.1 5772135..5773127(+) (cytR) [Streptomyces sp. NBC_01102]
MKRPTLDVVAARAGVSKSSVSRVINGETTVAPQIRDVVMRAVNELGYVPNGAARNLVTRRTDTLAVVVSDPPQGVVSDDP
LFSAVVRAVSRELETAGKRLVLMLAESDRSRTRVVQYIAGGHVDGVLLVALHGTDPLPAALARQGLPVVSFNRTSAQDVP
YVALDNAGGAALAVSHLLERGRRRIATITGPLELYEARERLDGYRQTLRDTGRRSIVALGDFTRASGAEAMRQLLEDDPD
LDAVFAANDLMAIGALRTLHQAGRRVPEDVAVIGFDDIEAASYTSPALTSVCSPMADQATAAVHLLLGLIDGGPTRPVIM
PNELVVREST

Nucleotide


Download         Length: 993 bp        

>NTDB_id=664535 OG596_RS25795 WP_405390954.1 5772135..5773127(+) (cytR) [Streptomyces sp. NBC_01102]
ATGAAACGCCCCACTCTCGATGTGGTAGCCGCCCGAGCGGGCGTGTCCAAATCGAGCGTCTCCCGGGTCATCAACGGCGA
GACGACGGTCGCCCCGCAGATCCGAGACGTCGTCATGCGCGCCGTGAACGAACTGGGCTACGTGCCCAACGGCGCGGCAC
GCAATCTCGTCACCCGCCGCACGGACACCCTCGCCGTGGTGGTGTCCGACCCGCCTCAAGGAGTCGTCTCCGACGACCCC
CTCTTCTCCGCCGTGGTCCGCGCCGTCAGCAGGGAGCTCGAGACGGCGGGCAAACGGCTCGTGCTCATGCTCGCGGAATC
GGACCGGAGCCGGACCAGAGTCGTGCAGTACATCGCCGGCGGGCATGTGGACGGCGTGCTCCTGGTCGCCCTGCACGGGA
CGGATCCGCTGCCGGCCGCACTGGCCCGGCAGGGCCTGCCTGTCGTGTCCTTCAACCGCACCTCCGCACAGGACGTCCCG
TACGTCGCGTTGGACAACGCCGGTGGAGCGGCGCTGGCCGTGAGTCATCTCCTGGAGCGCGGCCGGCGCCGGATCGCCAC
CATCACCGGGCCGCTCGAACTGTACGAGGCGCGGGAGCGCCTCGATGGCTACCGTCAGACGCTGCGTGACACCGGCCGTC
GCTCCATCGTGGCACTGGGCGACTTCACCAGAGCCTCCGGCGCCGAAGCCATGCGGCAGCTCCTGGAGGACGATCCCGAC
CTCGATGCGGTGTTCGCAGCCAACGACCTGATGGCGATAGGAGCCCTGCGCACCCTCCATCAAGCGGGCCGGCGTGTCCC
CGAAGACGTGGCGGTCATCGGCTTCGACGACATAGAAGCCGCGTCCTACACCAGTCCCGCGCTCACCTCGGTGTGCAGCC
CGATGGCCGATCAGGCGACCGCCGCCGTCCACCTGCTCCTCGGTCTGATCGACGGCGGCCCCACACGGCCGGTGATCATG
CCGAACGAACTCGTCGTGCGCGAGTCGACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.207

100

0.361