Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OG596_RS18940 Genome accession   NZ_CP108654
Coordinates   4216161..4217291 (+) Length   376 a.a.
NCBI ID   WP_405389765.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4211161..4222291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG596_RS18925 (OG596_18880) dnaA 4211211..4212983 (+) 1773 WP_405389764.1 chromosomal replication initiator protein DnaA -
  OG596_RS18930 (OG596_18885) dnaN 4213971..4215101 (+) 1131 WP_056793166.1 DNA polymerase III subunit beta -
  OG596_RS18935 (OG596_18890) gnd 4215233..4216111 (+) 879 WP_384494699.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  OG596_RS18940 (OG596_18895) recF 4216161..4217291 (+) 1131 WP_405389765.1 DNA replication/repair protein RecF Machinery gene
  OG596_RS18945 (OG596_18900) - 4217288..4217857 (+) 570 WP_405389766.1 DUF721 domain-containing protein -
  OG596_RS18950 (OG596_18905) gyrB 4218262..4220331 (+) 2070 WP_405389767.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40716.34 Da        Isoelectric Point: 6.8612

>NTDB_id=664514 OG596_RS18940 WP_405389765.1 4216161..4217291(+) (recF) [Streptomyces sp. NBC_01102]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVVRAAVTQGERS
QLIELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDLSTLDVWDQHLGRVGAELLAQRLDLVATLQPLADKAYADVAPGGGPVTLDYRSSIGADVV
PASTRDELYEQVMAALAEARKQEIERGVTLVGPHRDDLVLGLRGMPAKGYASHGESWSYALALRLASYDLLRTEGNEPVL
VLDDVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPGVLAGARYAVSAGAVERL

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=664514 OG596_RS18940 WP_405389765.1 4216161..4217291(+) (recF) [Streptomyces sp. NBC_01102]
ATGCACGTCACGCATCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCTCTCGACCCGGGCGTCACCGC
GTTCGTGGGTGCCAACGGCCAGGGCAAGACCAACCTGGTCGAGGCGGTCGGCTATCTCGCGACGCTCGGCAGCCACCGGG
TGTCGTCCGACGCCCCGCTGGTCCGGATGGGCGCCGAGCGTGCCGTCGTCAGGGCCGCGGTCACACAGGGCGAGCGGTCC
CAGCTGATCGAGCTCGAGCTCAACCCGGGCCGCGCGAATCGTGCCCGTATCAACAGGTCCTCGCAGGTCAGGCCCCGCGA
CGTACTGGGGATAGTCCGGACGGTGCTGTTCGCCCCCGAGGACCTGGCCCTGGTGAAGGGCGACCCTGGTGAGCGCAGAC
GCTTCCTGGACGAGCTGATCACGGCGCGTTCGCCGCGGATGGCGGGCGTCCGCTCCGACTACGAACGGGTGCTGAAGCAG
CGCAACACCCTGCTCAAGTCCGCGGCGATGGCCCGCCGGCACGGCGGCCGGTCGATGGACCTGTCCACCCTGGACGTGTG
GGACCAGCACCTGGGCCGCGTGGGCGCGGAGCTGCTCGCGCAGCGGCTGGACCTGGTCGCCACGCTGCAGCCGCTGGCGG
ACAAGGCGTACGCGGACGTGGCTCCCGGCGGTGGCCCGGTCACCCTGGACTACCGCAGCTCGATCGGCGCCGACGTGGTG
CCGGCCAGCACCCGCGACGAGCTGTACGAGCAGGTGATGGCGGCGCTCGCCGAGGCCCGCAAGCAGGAGATCGAGCGGGG
CGTGACCCTCGTCGGCCCGCACCGTGACGATCTGGTGCTGGGACTGCGCGGAATGCCGGCCAAGGGGTACGCGAGCCACG
GCGAGTCCTGGTCGTACGCGCTGGCGCTGCGGCTGGCCTCGTACGATCTGCTGCGCACCGAGGGCAACGAGCCGGTGCTC
GTGCTGGACGACGTGTTCGCCGAGCTGGACGCGCGCCGCCGTGAACGGCTGGCGGAGCTGGTGGCGCCGGGCGAGCAGGT
GCTGGTGACGGCCGCGGTGGACGACGACGTCCCGGGGGTGCTGGCGGGCGCGCGTTACGCGGTGTCCGCGGGGGCGGTGG
AGCGGCTGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.483

94.681

0.364