Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG596_RS10680 Genome accession   NZ_CP108654
Coordinates   2475035..2476240 (-) Length   401 a.a.
NCBI ID   WP_405388365.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2470035..2481240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG596_RS10660 (OG596_10620) - 2470393..2470731 (-) 339 WP_014048583.1 P-II family nitrogen regulator -
  OG596_RS10665 (OG596_10625) - 2470728..2472080 (-) 1353 WP_405388362.1 ammonium transporter -
  OG596_RS10670 (OG596_10630) - 2472418..2473893 (-) 1476 WP_405388363.1 hypothetical protein -
  OG596_RS10675 (OG596_10635) - 2474318..2474968 (+) 651 WP_405388364.1 bifunctional DNA primase/polymerase -
  OG596_RS10680 (OG596_10640) pilA 2475035..2476240 (-) 1206 WP_405388365.1 signal recognition particle-docking protein FtsY Machinery gene
  OG596_RS10685 (OG596_10645) - 2476351..2477742 (+) 1392 WP_405388366.1 purine-cytosine permease family protein -
  OG596_RS10690 (OG596_10650) - 2477928..2479346 (-) 1419 WP_405388367.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 401 a.a.        Molecular weight: 42016.08 Da        Isoelectric Point: 4.4865

>NTDB_id=664496 OG596_RS10680 WP_405388365.1 2475035..2476240(-) (pilA) [Streptomyces sp. NBC_01102]
MEIVILAVIIALVAVGLISGLVVSSRKKKQLPPSAPSSTPTITPPAEPHAGEEAEAPRDEARRTIEEVGPPGDGTPVGEA
PVVIEPEIPALEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQELVERLRER
VRVLGTRTPEGLRALLREELVALLGPDLDRAVRTEGGTETPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAADTF
RAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPLDE
ILLVLDSTTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGPDDLAPFEPEAFVDALIG
D

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=664496 OG596_RS10680 WP_405388365.1 2475035..2476240(-) (pilA) [Streptomyces sp. NBC_01102]
ATGGAAATCGTCATCCTTGCTGTCATCATCGCCCTGGTCGCGGTCGGCCTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCGCCCTCGGCGCCGTCGAGCACGCCGACCATCACTCCTCCCGCCGAACCCCACGCCGGTGAGGAAG
CCGAGGCGCCGCGCGACGAAGCGCGGCGCACCATCGAGGAGGTCGGTCCCCCCGGCGACGGGACTCCGGTCGGGGAAGCC
CCCGTGGTCATCGAGCCGGAGATCCCCGCGCTCGAGGTCCCCGAGCCCACCGCGGGCCGTCTGGTACGGCTCCGCGCGCG
GCTCGCCCGCTCGCAGAACTCGTTGGGCAAGGGGCTGCTCACGCTCCTGTCGCGCGACAACCTCGACGAGGACACCTGGG
AGGAGATCGAGGACACGCTCCTCACCGCCGACGTCGGCGTCGCCCCCACCCAGGAGCTGGTGGAGCGGCTCCGTGAGCGG
GTCCGTGTCCTCGGCACCCGTACCCCCGAGGGGCTGCGCGCGCTGCTGCGCGAGGAGCTCGTCGCGCTGCTCGGCCCCGA
CCTCGACCGTGCGGTCAGGACGGAGGGAGGCACCGAGACGCCCGGCGTCGTGATGGTCGTCGGGGTCAACGGCACCGGCA
AGACGACCACGACGGGCAAGCTCGCCCGGGTGCTCGTCGCCGACGGCCGCAGCGTCGTGCTCGGCGCGGCGGACACCTTC
CGTGCCGCGGCCGCCGACCAGCTCCAGACCTGGGGCGAGCGCGTCGGCGCCCGGACGGTCCGCGGGCCCGAGGGCGGAGA
CCCGGCGTCGATCGCCTTCGACGCCGTGAAGGAGGGCATCGCCGAGGGCGCCGACGTGGTGCTCATCGACACCGCCGGCC
GTCTGCACACCAAGACGGGCCTCATGGACGAGCTCGGCAAGGTCAAGCGGGTCGTCGAGAAGCACGGGCCGCTCGACGAG
ATCCTTCTCGTCCTGGACTCCACGACCGGGCAGAACGGACTCGTCCAGGCACGGGTGTTCGCCGAGGTCGTCGACATCAC
CGGCATCGTCCTCACCAAGCTGGACGGCACCGCCAAGGGCGGCATCGTGATCGCCGTCCAGCGCGAGCTGGGCGTACCGG
TGAAGCTCATCGGCCTCGGTGAAGGGCCGGACGACCTGGCACCGTTCGAGCCGGAGGCCTTCGTCGACGCGCTGATCGGC
GACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(115-180)

SRP54-type protein, GTPase domain (SRP54)

(202-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.547

92.02

0.392