Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG450_RS38875 Genome accession   NZ_CP108652
Coordinates   8892504..8893505 (+) Length   333 a.a.
NCBI ID   WP_405407120.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01104     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8887504..8898505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG450_RS38850 (OG450_38760) - 8888059..8888457 (-) 399 WP_405406917.1 hypothetical protein -
  OG450_RS38855 (OG450_38765) - 8888454..8889038 (-) 585 WP_405406918.1 hypothetical protein -
  OG450_RS38860 (OG450_38770) - 8889307..8890590 (+) 1284 WP_285565432.1 ABC transporter substrate-binding protein -
  OG450_RS38865 (OG450_38775) - 8890623..8891564 (+) 942 WP_374769192.1 sugar ABC transporter permease -
  OG450_RS38870 (OG450_38780) - 8891578..8892405 (+) 828 WP_405406919.1 carbohydrate ABC transporter permease -
  OG450_RS38875 (OG450_38785) cytR 8892504..8893505 (+) 1002 WP_405407120.1 LacI family DNA-binding transcriptional regulator Regulator
  OG450_RS38880 (OG450_38790) - 8893645..8895579 (+) 1935 WP_285565429.1 cellulase family glycosylhydrolase -
  OG450_RS38885 (OG450_38795) - 8895647..8897983 (+) 2337 WP_405406920.1 glycoside hydrolase family 3 N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 34968.85 Da        Isoelectric Point: 6.7036

>NTDB_id=664483 OG450_RS38875 WP_405407120.1 8892504..8893505(+) (cytR) [Streptomyces sp. NBC_01104]
MAAAAGVSTAAVSQAVNGTGRISEATRRRVLAAAAELGWSPSASASALRRARTRTIALVVRRPTDVLGADPHFSELITGL
EGELAPRGYGLLLHLVADIAQENALYERLVAEGRIDGAVLTDARADDPRPHLLRDLGLPAVLLGAPDPESPVPGVGLGQQ
DAGVREAVAHLLELGHRRFAYVAGPAELVHTRLRRAAFEDALAVAGLSPVAVRHTDFTEQAAVAVTEELLALPGRPTALV
FPNDSMAVIGIGTAQRRGLRVPQDVSVVGYDNLPLGRWLHPRLTTVDQQVQRVGAAAARELLLRCGEDVPAPVLDGRPSL
FVRESTGPSPAGS

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=664483 OG450_RS38875 WP_405407120.1 8892504..8893505(+) (cytR) [Streptomyces sp. NBC_01104]
GTGGCCGCCGCGGCCGGGGTCTCCACCGCCGCGGTCTCCCAGGCCGTCAACGGCACCGGCCGGATCTCCGAGGCCACCCG
CCGCCGGGTCCTCGCGGCGGCCGCCGAACTGGGCTGGTCGCCCAGCGCGTCCGCGTCGGCCCTGCGCCGGGCCCGGACCC
GCACGATCGCGCTCGTCGTCAGGCGCCCCACGGACGTGCTCGGCGCCGACCCGCACTTCAGCGAACTGATCACCGGCCTG
GAGGGCGAACTCGCCCCCCGGGGCTACGGTCTCCTGCTCCACCTGGTCGCCGACATCGCCCAGGAGAACGCCCTGTACGA
ACGGCTGGTCGCGGAGGGCCGCATAGACGGAGCCGTACTGACCGACGCGCGCGCCGACGACCCGCGCCCGCACCTGCTGC
GGGACCTCGGACTGCCCGCCGTCCTGCTGGGCGCACCCGACCCCGAATCACCCGTGCCCGGTGTGGGGCTCGGTCAGCAG
GACGCCGGTGTCCGCGAGGCCGTCGCCCACCTGCTGGAACTCGGCCACCGGCGGTTCGCGTACGTCGCGGGCCCGGCCGA
ACTGGTGCACACCCGGCTGCGCCGCGCCGCCTTCGAGGATGCGCTTGCCGTGGCCGGGCTGAGTCCCGTGGCCGTCCGGC
ACACCGATTTCACCGAACAGGCGGCCGTCGCCGTGACCGAGGAACTGCTCGCCCTGCCCGGCCGGCCGACCGCGCTGGTC
TTCCCCAACGACTCCATGGCCGTCATCGGCATCGGCACGGCCCAGCGCCGCGGACTCCGGGTGCCGCAGGACGTGTCGGT
GGTCGGTTACGACAACCTGCCGCTCGGCCGCTGGCTCCACCCCCGTCTGACCACCGTGGACCAGCAGGTGCAACGGGTCG
GTGCGGCCGCCGCCCGTGAACTGCTCCTCCGCTGCGGCGAGGACGTGCCGGCACCTGTCCTCGACGGACGCCCCAGCCTG
TTCGTCCGGGAGTCGACGGGCCCGTCTCCCGCCGGGTCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(2-42)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.937

100

0.369