Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG450_RS29885 Genome accession   NZ_CP108652
Coordinates   6810021..6810815 (-) Length   264 a.a.
NCBI ID   WP_219573501.1    Uniprot ID   A0ABY9IM67
Organism   Streptomyces sp. NBC_01104     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6805021..6815815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG450_RS29870 (OG450_29815) - 6805256..6805957 (+) 702 WP_266783699.1 GNAT family N-acetyltransferase -
  OG450_RS29875 (OG450_29820) - 6806018..6807895 (+) 1878 WP_326672897.1 IucA/IucC family siderophore biosynthesis protein -
  OG450_RS29880 (OG450_29825) - 6807946..6809916 (+) 1971 WP_266783703.1 ATP-dependent DNA helicase -
  OG450_RS29885 (OG450_29830) dinR/lexA 6810021..6810815 (-) 795 WP_219573501.1 transcriptional repressor LexA Regulator
  OG450_RS29890 (OG450_29835) nrdR 6811371..6811883 (+) 513 WP_266783706.1 transcriptional regulator NrdR -
  OG450_RS29895 (OG450_29840) - 6812042..6814948 (+) 2907 WP_405405767.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28622.39 Da        Isoelectric Point: 6.9854

>NTDB_id=664465 OG450_RS29885 WP_219573501.1 6810021..6810815(-) (dinR/lexA) [Streptomyces sp. NBC_01104]
MTTTADSAIITAQDRSQSRLEPVHAMNDSVTNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=664465 OG450_RS29885 WP_219573501.1 6810021..6810815(-) (dinR/lexA) [Streptomyces sp. NBC_01104]
GTGACCACCACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGGGGCCGGAGCCCGCGCGCCCAGCGCGCTCGCTGCCCGGACGACCTCCTGGAATCCGGG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTCATCCGGGACTCCGTACAACGCCGGGGATACCCC
CCGTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTTTCCAGCACGTCCTCCGTCGCACATCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTGCGCCGCGACCCCCATCGCCCCCGGGCGTACGAGGTGCGCGGTTCGGACCAGCCCAGCACGCAGCCCA
CGGACACGACCGGCAAGCCCGCGGCGTCGTACGTGCCGCTGGTCGGCCGGATCGCGGCCGGTGGTCCGATCCTCGCCGAG
GAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTGGTCGGGGACGGCGAGCTCTTCGTGCTGAAGGTCGTCGGTGA
CTCGATGATCGAAGCGGCGATCTGTGACGGGGACTGGGTCACCGTGCGCCGCCAGCCCGTGGCGGAGAACGGCGACATCG
TGGCCGCGATGCTGGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTGTGGCTGCTCCCCCACAAC
TCCGCGTACCAGCCGATTCCCGGCGACGAGGCGACGATCCTCGGCAAGGTCGTGGCGGTGCTGCGTCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371