Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG450_RS04160 Genome accession   NZ_CP108652
Coordinates   932445..933467 (-) Length   340 a.a.
NCBI ID   WP_285570480.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01104     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 927445..938467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG450_RS04135 (OG450_04115) - 927490..929013 (-) 1524 WP_405401787.1 catalase -
  OG450_RS04140 (OG450_04120) - 929222..929710 (+) 489 WP_266775497.1 flavin reductase family protein -
  OG450_RS04145 (OG450_04125) - 929751..929879 (-) 129 WP_266775499.1 LPFR motif small protein -
  OG450_RS04150 (OG450_04130) - 930125..930553 (+) 429 WP_285570476.1 polyketide cyclase -
  OG450_RS04155 (OG450_04135) - 930684..931772 (-) 1089 WP_266775503.1 lytic polysaccharide monooxygenase -
  OG450_RS04160 (OG450_04140) cytR 932445..933467 (-) 1023 WP_285570480.1 LacI family DNA-binding transcriptional regulator Regulator
  OG450_RS04165 (OG450_04145) - 933937..935313 (+) 1377 WP_405401791.1 cellulase family glycosylhydrolase -
  OG450_RS04170 (OG450_04150) - 935481..936632 (+) 1152 WP_405401793.1 HEAT repeat domain-containing protein -
  OG450_RS04175 (OG450_04155) - 937024..937770 (-) 747 WP_285570485.1 DUF2071 domain-containing protein -
  OG450_RS04180 (OG450_04160) - 937767..938099 (-) 333 WP_405401795.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36647.00 Da        Isoelectric Point: 6.8875

>NTDB_id=664404 OG450_RS04160 WP_285570480.1 932445..933467(-) (cytR) [Streptomyces sp. NBC_01104]
MLKRSSGTPTLEEVAALAGVGRGTVSRVINNASGVKASTRRTVLRAIDELDYVPNLAARSLAGRRADAVALVMTKADWRL
FGEPFFSEVVRAVGDALAEVDVQLLLTLVRTDAERQRLVKYVRGGRVDGVLLMSMRAEDRLPDMLADAGVPTVLLGRRSG
EERVTYVDADNVGGARAAVGHLTRGGRKVIAAITGPPEMYVAQCRLRGYREALGDAGLDEVPSLVVQGDFSEASGRRAMT
GLIERHPEVDAVFAASDSMAAGALAALHAAGRRVPQDVAVIGFDDFELAEQTEPSLTTVRQPMEEIGRTMVRLLLEEMGQ
PQVAWRHAILRTRLVVRESA

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=664404 OG450_RS04160 WP_285570480.1 932445..933467(-) (cytR) [Streptomyces sp. NBC_01104]
ATGCTGAAGCGAAGTTCCGGCACACCGACGCTGGAGGAAGTGGCCGCCCTTGCCGGTGTGGGGCGGGGCACGGTCTCCCG
AGTGATCAACAACGCGTCGGGCGTCAAGGCGTCCACACGCCGTACCGTGCTGCGCGCCATCGACGAACTGGACTACGTGC
CCAATCTGGCCGCGCGTTCACTGGCCGGGCGGCGCGCGGACGCCGTCGCCCTGGTGATGACGAAGGCGGACTGGCGGCTG
TTCGGCGAGCCGTTCTTCTCGGAGGTCGTACGGGCGGTCGGGGATGCCCTGGCCGAGGTGGACGTGCAGCTCCTGCTCAC
ACTGGTCCGCACGGACGCCGAGCGGCAGCGGCTCGTCAAGTACGTGCGCGGCGGCCGGGTCGACGGGGTGCTGCTGATGT
CCATGCGGGCCGAGGACCGGCTGCCGGACATGCTCGCCGACGCCGGGGTGCCCACGGTGCTGCTGGGCAGGCGCTCGGGG
GAGGAGCGGGTGACCTACGTGGACGCGGACAACGTCGGTGGCGCTCGGGCCGCGGTCGGCCATCTGACGCGCGGCGGGCG
GAAGGTCATCGCCGCGATCACGGGCCCGCCCGAGATGTACGTCGCCCAGTGCAGGCTGCGCGGCTACCGGGAGGCGCTGG
GTGACGCAGGGCTCGACGAGGTGCCGTCGCTGGTCGTACAGGGAGATTTCAGCGAGGCCAGCGGGCGCCGGGCGATGACG
GGACTCATCGAGCGGCATCCGGAGGTCGACGCCGTCTTCGCCGCGTCGGACAGCATGGCCGCCGGAGCGCTTGCCGCCCT
GCATGCGGCGGGGCGCCGGGTGCCCCAGGACGTGGCGGTGATCGGCTTCGACGACTTCGAGCTGGCCGAGCAGACGGAAC
CGTCCCTGACGACCGTGCGTCAGCCGATGGAGGAGATCGGCCGGACCATGGTGCGGCTGCTGCTGGAGGAAATGGGCCAG
CCGCAGGTGGCCTGGCGTCATGCGATCCTCCGGACGCGGCTGGTGGTGCGCGAGTCGGCCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-339)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

35.632

100

0.365
  cytR Vibrio cholerae C6706

36.176

100

0.362