Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG508_RS22465 Genome accession   NZ_CP108649
Coordinates   4879549..4880961 (-) Length   470 a.a.
NCBI ID   WP_266906265.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4874549..4885961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG508_RS22440 (OG508_22490) - 4874660..4875310 (-) 651 WP_266746944.1 SigE family RNA polymerase sigma factor -
  OG508_RS22445 (OG508_22495) - 4875484..4876386 (-) 903 WP_266746943.1 A/G-specific adenine glycosylase -
  OG508_RS22450 (OG508_22500) - 4876542..4877225 (-) 684 WP_406735208.1 phosphatase PAP2 family protein -
  OG508_RS22455 (OG508_22505) - 4877399..4878208 (+) 810 WP_266746941.1 hypothetical protein -
  OG508_RS22460 (OG508_22510) disA 4878344..4879468 (-) 1125 WP_266746940.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG508_RS22465 (OG508_22515) radA/sms 4879549..4880961 (-) 1413 WP_266906265.1 DNA repair protein RadA Machinery gene
  OG508_RS22470 (OG508_22520) - 4881177..4883084 (+) 1908 WP_406735209.1 BACON domain-containing protein -
  OG508_RS22475 (OG508_22525) - 4883167..4884009 (-) 843 WP_266746937.1 hypothetical protein -
  OG508_RS22480 (OG508_22530) - 4884050..4885015 (+) 966 WP_266746936.1 Ppx/GppA phosphatase family protein -
  OG508_RS22485 (OG508_22535) - 4885132..4885959 (+) 828 WP_266746935.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49394.46 Da        Isoelectric Point: 8.4875

>NTDB_id=664375 OG508_RS22465 WP_266906265.1 4879549..4880961(-) (radA/sms) [Streptomyces sp. NBC_01108]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASSDHRTLYVTAEESASQVRLRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAYRLGFTHALVPTDPGKVPAGMKVTEVANMGDALSVLPRRSRAQAPQEESARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=664375 OG508_RS22465 WP_266906265.1 4879549..4880961(-) (radA/sms) [Streptomyces sp. NBC_01108]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCATGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTGCGGACCACCGCGGCCG
GCCGGGTCAGCACCGCCGCGCTCCCCATCGGCCAGGTCGACAGCCGGCAGGCCACCGCCCGGTCCACCGGCGTCGGTGAG
CTGGACCGGGTGCTCGGCGGCGGGCTCGTCCCGGGCGCCGTCGTGCTGCTCGCGGGCGAACCGGGCGTCGGGAAGTCGAC
GCTGCTGCTGGACGTCGCCGCCAAGGCGGCGAGCAGCGACCACCGCACCCTCTACGTCACCGCCGAGGAGTCCGCGAGCC
AGGTGCGCCTGCGCGCCGACCGGATCCGGGCGATCAACGACCATCTGTATCTCGCCGCCGAGACGGACCTGTCCGCGGTC
CTCGGCCATCTGGACGCGGTCAAGCCGTCGCTCCTCATCCTCGACTCCGTACAGACCGTCGCCTCGCCCGAGATCGACGG
GGCCCCCGGCGGCATGGCGCAGGTCCGGGAGGTCGCCGGTGCCCTCATCCGGGCCTCCAAGGAGCGCGGCATGTCGACGC
TCCTGGTCGGCCACGTCACCAAGGACGGGGCGATCGCCGGGCCGAGGCTGCTGGAGCATCTCGTCGATGTGGTGCTGTCG
TTCGAGGGCGACCGCCATGCCCGCCTGCGGCTCGTACGCGGCGTCAAGAACAGGTACGGCGCGACCGACGAGGTCGGCTG
TTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCGTCCGGGCTGTTCCTCACCCGGCGCGACGAGCCGGTGC
CCGGCACCTGCCTGACCGTCACCCTGGAAGGCAAGCGGCCGCTCGTCGCCGAGGTACAGGCGCTGACCGTCGATTCCCAG
ATCCCTTCACCCCGGCGCACCACCTCGGGGCTGGAGACGTCCCGGGTATCGATGATGCTGGCCGTTCTGGAGCAGCGCGG
CCGGATCAGCTCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTCGGCGGAGTGAAGCTCTCCGAGCCCGCCGCGGACC
TCGCGGTCGCGCTGGCGCTGGCCAGCGCCGCCAGTGACACACCCCTTCCCAAGAACCTGGTGGCGATCGGCGAGGTGGGC
CTCGCGGGCGAGGTCAGACGTGTTACGGGGGTCCAGCGCAGGCTGGCCGAGGCGTACCGCCTGGGCTTCACGCACGCGCT
GGTTCCGACCGATCCGGGAAAGGTCCCGGCCGGTATGAAGGTCACAGAAGTCGCCAACATGGGCGATGCTCTGAGCGTGC
TCCCGCGCCGGTCTCGCGCACAGGCCCCACAGGAGGAGAGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.805

96.17

0.421
  radA Streptococcus mitis SK321

44.289

91.277

0.404
  radA Streptococcus pneumoniae Rx1

44.289

91.277

0.404
  radA Streptococcus pneumoniae D39

44.289

91.277

0.404
  radA Streptococcus pneumoniae R6

44.289

91.277

0.404
  radA Streptococcus pneumoniae TIGR4

44.289

91.277

0.404
  radA Streptococcus mitis NCTC 12261

44.289

91.277

0.404