Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   MON07_RS27060 Genome accession   NZ_CP093395
Coordinates   5819976..5820533 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA1_NCHU     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5814976..5825533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON07_RS27045 (MON07_27045) pilY1 5815074..5818559 (-) 3486 WP_023518093.1 type 4a pilus biogenesis protein PilY1 -
  MON07_RS27050 (MON07_27050) pilX 5818571..5819158 (-) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  MON07_RS27055 (MON07_27055) pilW 5819155..5819979 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  MON07_RS27060 (MON07_27060) pilV 5819976..5820533 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  MON07_RS27065 (MON07_27065) - 5820524..5821030 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  MON07_RS27070 (MON07_27070) - 5821136..5821645 (-) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  MON07_RS27075 (MON07_27075) thiO 5821780..5822874 (+) 1095 WP_023518092.1 glycine oxidase ThiO -
  MON07_RS27080 (MON07_27080) pilR 5822920..5824257 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=664350 MON07_RS27060 WP_003119423.1 5819976..5820533(-) (pilV) [Pseudomonas aeruginosa strain PA1_NCHU]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=664350 MON07_RS27060 WP_003119423.1 5819976..5820533(-) (pilV) [Pseudomonas aeruginosa strain PA1_NCHU]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995