Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG508_RS11115 Genome accession   NZ_CP108649
Coordinates   2456982..2458190 (-) Length   402 a.a.
NCBI ID   WP_266748910.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01108     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2451982..2463190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG508_RS11095 (OG508_11115) - 2452227..2452565 (-) 339 WP_266748915.1 P-II family nitrogen regulator -
  OG508_RS11100 (OG508_11120) - 2452562..2453917 (-) 1356 WP_266752492.1 ammonium transporter -
  OG508_RS11105 (OG508_11125) - 2454302..2455777 (-) 1476 WP_266748913.1 hypothetical protein -
  OG508_RS11110 (OG508_11130) - 2456201..2456860 (+) 660 WP_266748912.1 bifunctional DNA primase/polymerase -
  OG508_RS11115 (OG508_11135) pilA 2456982..2458190 (-) 1209 WP_266748910.1 signal recognition particle-docking protein FtsY Machinery gene
  OG508_RS11120 (OG508_11140) - 2458300..2459709 (+) 1410 WP_327258702.1 cytosine permease -
  OG508_RS11125 (OG508_11145) - 2459768..2460742 (+) 975 WP_266748907.1 LLM class flavin-dependent oxidoreductase -
  OG508_RS11130 (OG508_11150) - 2460753..2462171 (-) 1419 WP_266748905.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 42301.38 Da        Isoelectric Point: 4.4406

>NTDB_id=664342 OG508_RS11115 WP_266748910.1 2456982..2458190(-) (pilA) [Streptomyces sp. NBC_01108]
MEFVILAVVIALVAVGVISGLVVSSRKKKQLPPAPSSTPTITPPEPHVGEEAEVPREEPRRTIEEVGPSVAEAPVEEAPE
TVEPEALAAPAIEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQELVERLRE
RVRVLGTRTPEGLRALLREELIALLGTDFDRAVKTESGVDTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAADT
FRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPLD
EILLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGPDDLAPFEPEAFVDALI
GD

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=664342 OG508_RS11115 WP_266748910.1 2456982..2458190(-) (pilA) [Streptomyces sp. NBC_01108]
ATGGAATTCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCCCCGGCACCGTCGAGCACGCCGACCATCACTCCTCCCGAGCCCCATGTCGGCGAGGAAGCCGAAG
TGCCGCGCGAGGAACCGCGCCGCACCATCGAGGAGGTCGGCCCCTCGGTGGCCGAGGCTCCCGTCGAGGAAGCCCCCGAG
ACCGTCGAGCCGGAGGCGCTCGCCGCCCCCGCCATCGAGGTGCCCGAGCCCACCGCCGGCCGGCTGGTCCGGCTGCGTGC
CCGGCTCGCCCGCTCGCAGAACTCCCTCGGCAAGGGGCTGCTCACGCTCCTGTCCCGCGACAACCTCGACGAGGACACCT
GGGAGGAGATCGAGGACACCCTCCTCACCGCCGATGTCGGCGTCGCACCCACCCAGGAACTGGTGGAGCGGCTCCGCGAA
CGTGTCCGTGTCCTCGGCACCCGTACCCCCGAAGGGCTGCGCGCGCTGCTGCGCGAGGAGCTCATCGCCCTGCTCGGCAC
CGACTTCGACCGTGCGGTCAAGACGGAGAGCGGCGTCGACACCCCGGGCGTCGTGATGGTCGTCGGCGTCAACGGAACCG
GCAAGACCACCACCACCGGCAAGCTGGCGCGGGTGCTCGTCGCCGACGGCCGTAGCGTCGTGCTCGGTGCGGCCGACACC
TTCCGGGCCGCCGCCGCCGATCAGCTCCAGACCTGGGGCGAGCGCGTCGGCGCCCGCACCGTGCGCGGACCCGAGGGCGG
CGACCCCGCGTCGATCGCCTTCGACGCGGTGAAGGAAGGCATCGCCGAGGGTGCCGATGTCGTCCTCATCGACACCGCGG
GCCGGCTGCACACCAAGACCGGGCTCATGGACGAGCTCGGCAAGGTCAAGCGGGTCGTAGAGAAGCACGGGCCGCTCGAC
GAGATCCTCCTCGTCCTCGACGCCACGACCGGACAGAACGGCCTGGTGCAGGCCCGGGTGTTCGCCGAGGTCGTCGACAT
CACCGGCATCGTCCTCACCAAGCTGGACGGCACCGCCAAGGGCGGCATCGTCGTCGCCGTCCAGCGCGAACTGGGCGTAC
CGGTGAAGCTCATCGGTCTCGGCGAGGGGCCGGACGATCTGGCCCCGTTCGAGCCCGAGGCGTTCGTGGACGCTCTGATC
GGAGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(116-181)

SRP54-type protein, GTPase domain (SRP54)

(203-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

43.944

88.308

0.388