Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PSCI_RS05310 Genome accession   NZ_AP014637
Coordinates   1146331..1147698 (-) Length   455 a.a.
NCBI ID   WP_045493866.1    Uniprot ID   A0A077LD56
Organism   Pseudomonas sp. StFLB209     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1141331..1152698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSCI_RS05290 (PSCI_1045) yjiA 1142313..1143293 (-) 981 WP_045483736.1 GTPase -
  PSCI_RS05295 (PSCI_1046) - 1143385..1143582 (-) 198 WP_045483739.1 YbdD/YjiX family protein -
  PSCI_RS05300 (PSCI_1047) - 1143607..1145682 (-) 2076 WP_045483742.1 carbon starvation CstA family protein -
  PSCI_RS05305 (PSCI_1048) - 1145957..1146325 (+) 369 WP_045483745.1 PilZ domain-containing protein -
  PSCI_RS05310 (PSCI_1049) radA 1146331..1147698 (-) 1368 WP_045493866.1 DNA repair protein RadA Machinery gene
  PSCI_RS05315 (PSCI_1050) mscL 1147895..1148329 (+) 435 WP_045483748.1 large-conductance mechanosensitive channel protein MscL -
  PSCI_RS05320 (PSCI_1051) - 1148343..1149101 (-) 759 WP_231906561.1 transposase -
  PSCI_RS29720 (PSCI_1052) - 1149040..1149393 (-) 354 WP_231906368.1 hypothetical protein -
  PSCI_RS05325 (PSCI_1053) - 1149526..1150302 (-) 777 WP_045483751.1 ferredoxin--NADP reductase -
  PSCI_RS28165 (PSCI_1054) - 1150639..1150872 (+) 234 WP_084710201.1 LuxR C-terminal-related transcriptional regulator -
  PSCI_RS05335 (PSCI_1055) - 1150998..1152122 (+) 1125 WP_045483754.1 class I SAM-dependent methyltransferase -
  PSCI_RS28425 (PSCI_1056) - 1152406..1152573 (-) 168 WP_084709853.1 DUF2474 domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48778.17 Da        Isoelectric Point: 6.7675

>NTDB_id=66434 PSCI_RS05310 WP_045493866.1 1146331..1147698(-) (radA) [Pseudomonas sp. StFLB209]
MAKAKRLYGCTECGATFPKWAGQCADCGAWNTLVETVLESGAAAAPSGRSGWTGAQTQIKTLAEVSVEEIPRFSTRSTEL
DRVLGGGMVDGSVILIGGDPGIGKSTILLQTLCHLAESMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETSIESIIA
TARVEQPKVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GEADGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLSRAQEEVSGSVVMATWEGTRPMLVEVQALVDDSHMA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEGFAGLQVVAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=66434 PSCI_RS05310 WP_045493866.1 1146331..1147698(-) (radA) [Pseudomonas sp. StFLB209]
ATGGCCAAAGCCAAGCGCTTGTACGGTTGCACTGAATGCGGTGCGACTTTTCCCAAATGGGCCGGGCAATGTGCCGACTG
CGGTGCGTGGAACACCCTGGTCGAAACCGTGCTGGAGAGCGGCGCAGCCGCGGCGCCCAGCGGGCGTAGTGGCTGGACCG
GGGCGCAGACCCAGATCAAGACCCTGGCCGAAGTCAGTGTTGAAGAAATTCCGCGTTTTTCTACCCGCTCCACCGAGCTG
GACCGGGTGCTGGGCGGCGGGATGGTCGATGGCTCGGTGATCCTGATCGGCGGCGATCCCGGCATCGGCAAATCCACCAT
TCTGCTGCAAACCTTGTGTCATCTGGCCGAGAGCATGCCGGCCCTGTATGTCACCGGTGAGGAATCGCAACAACAGGTGG
CCATGCGCGCCCGGCGTCTGGGGCTGCCGCAAGACAAGCTGCGGGTGATGACCGAGACCAGCATCGAGTCGATCATTGCC
ACTGCCAGGGTCGAGCAACCCAAGGTCATGGTCATCGACTCGATCCAGACCATCTTTACCGAACAGCTGCAATCGGCGCC
CGGTGGTGTGGCTCAGGTTCGCGAAAGCACCGCGCTGCTGGTGCGCTATGCCAAGCAAAGCGGTACGGCGATCTTTCTGG
TCGGCCATGTCACCAAAGAGGGCGCGCTGGCCGGCCCGCGCGTGTTGGAGCATATGGTCGATACCGTGTTGTACTTCGAG
GGTGAAGCCGATGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGGTTCGGCGCGGTCAACGAACTGGGGGTGTTCGG
CATGACTGACCGGGGCCTCAAGGAGGTCTCCAACCCGTCGGCGATTTTCCTCAGCCGCGCCCAGGAAGAGGTGTCTGGCA
GTGTAGTGATGGCCACTTGGGAGGGGACCCGGCCGATGCTGGTCGAGGTGCAGGCACTGGTCGATGACAGCCATATGGCC
AACCCGCGCCGGGTTACTCTGGGGCTGGATCAGAATCGCCTGGCCATGCTGCTGGCGGTGCTGCATCGCCATGGCGGCAT
CCCGACCCACGATCAGGATGTGTTCCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCGTTGCCCCATGACCTGCTGGTGTTCGGCGAGGTTGGGTTGTCAGGG
GAGGTGCGCCCGGTGCCCAGTGGCCAGGAGCGTCTGAAGGAGGCAGCCAAGCACGGCTTCAAGCGTGCCATCGTACCCAA
GGGCAATGCGCCCAAAGAGGGATTTGCCGGCTTGCAGGTCGTCGCCGTCACCCGCCTTGAACAGGCCCTGGATGCCTTGT
TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(72-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A077LD56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.578

100

0.488
  radA Streptococcus pneumoniae Rx1

47.391

100

0.479
  radA Streptococcus pneumoniae D39

47.391

100

0.479
  radA Streptococcus pneumoniae R6

47.391

100

0.479
  radA Streptococcus pneumoniae TIGR4

47.391

100

0.479
  radA Streptococcus mitis NCTC 12261

47.174

100

0.477
  radA Streptococcus mitis SK321

47.174

100

0.477

Multiple sequence alignment