Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG508_RS10215 Genome accession   NZ_CP108649
Coordinates   2247202..2247996 (+) Length   264 a.a.
NCBI ID   WP_093898912.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01108     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2242202..2252996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG508_RS10205 (OG508_10230) - 2243021..2245924 (-) 2904 WP_266749135.1 vitamin B12-dependent ribonucleotide reductase -
  OG508_RS10210 (OG508_10235) nrdR 2246084..2246596 (-) 513 WP_266749133.1 transcriptional regulator NrdR -
  OG508_RS10215 (OG508_10240) dinR/lexA 2247202..2247996 (+) 795 WP_093898912.1 transcriptional repressor LexA Regulator
  OG508_RS10220 (OG508_10245) - 2248107..2250077 (-) 1971 WP_266749132.1 ATP-dependent DNA helicase -
  OG508_RS10225 (OG508_10250) - 2250128..2252176 (-) 2049 WP_266749130.1 IucA/IucC family siderophore biosynthesis protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28624.36 Da        Isoelectric Point: 6.9854

>NTDB_id=664337 OG508_RS10215 WP_093898912.1 2247202..2247996(+) (dinR/lexA) [Streptomyces sp. NBC_01108]
MTTTADSATITAQDRSQSRLEPVHAMNDSVTNTEGPEPVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=664337 OG508_RS10215 WP_093898912.1 2247202..2247996(+) (dinR/lexA) [Streptomyces sp. NBC_01108]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGGGGCCGGAACCCGTGCGCCCAGCGCGCTCGCTACCCGGCCGACCTCCAGGAATCCGGG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGCGTGATCGAGGTGATCCGGGATTCCGTGCAGCGGCGCGGGTACCCG
CCCTCGATGCGGGAGATCGGTCAGGCAGTGGGCCTGTCCAGCACGTCCTCCGTCGCCCATCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTTCGTCGCGATCCCCATCGCCCCCGGGCGTACGAGGTCCGTGGCTCGGACCAGCCCAGCTCGCAGCCCA
CCGATACGACCGGGAAGCCCGCGGCGTCGTACGTGCCGCTCGTCGGCCGGATCGCAGCGGGTGGCCCGATCCTCGCCGAG
GAATCGGTCGAGGACGTCTTCCCGCTGCCCCGCCAGCTGGTCGGTGACGGTGAGCTGTTCGTCCTCAAGGTCGTCGGTGA
CTCGATGATCGAGGCGGCGATCTGCGACGGCGACTGGGTCACCGTGCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCAGCCATGCTGGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTGTGGCTGCTCCCCCACAAC
TCCGCGTACCAGCCGATCCCTGGCGACGAGGCGACGATCCTCGGCAAGGTGGTTGCGGTGTTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.303

0.375