Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG245_RS33770 Genome accession   NZ_CP108644
Coordinates   7693775..7694797 (-) Length   340 a.a.
NCBI ID   WP_371628061.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01116     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7688775..7699797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG245_RS33745 (OG245_33740) - 7689617..7691758 (+) 2142 WP_371627131.1 ATP-binding protein -
  OG245_RS33750 (OG245_33745) - 7691755..7692189 (+) 435 WP_032791393.1 roadblock/LC7 domain-containing protein -
  OG245_RS33755 (OG245_33750) - 7692192..7692563 (+) 372 WP_371627132.1 DUF742 domain-containing protein -
  OG245_RS33760 (OG245_33755) - 7692541..7693164 (+) 624 WP_371627133.1 ATP/GTP-binding protein -
  OG245_RS33765 (OG245_33760) - 7693161..7693745 (+) 585 WP_371627134.1 GAF domain-containing protein -
  OG245_RS33770 (OG245_33765) cytR 7693775..7694797 (-) 1023 WP_371628061.1 LacI family DNA-binding transcriptional regulator Regulator
  OG245_RS33775 (OG245_33770) - 7695054..7695917 (+) 864 WP_371627135.1 ABC transporter permease -
  OG245_RS33780 (OG245_33775) - 7695945..7696967 (+) 1023 WP_371627136.1 ABC transporter substrate-binding protein -
  OG245_RS33785 (OG245_33780) - 7696964..7697794 (+) 831 WP_371627137.1 ABC transporter ATP-binding protein -
  OG245_RS33790 (OG245_33785) - 7697963..7698835 (-) 873 WP_371627138.1 sugar phosphate isomerase/epimerase family protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 35741.00 Da        Isoelectric Point: 9.1366

>NTDB_id=664320 OG245_RS33770 WP_371628061.1 7693775..7694797(-) (cytR) [Streptomyces sp. NBC_01116]
MTLDAVAREAGVSLATASRALNGTTRVRDDLRERVRAAADLLGYIPNAHAQALASPEGNRTVGLICHDVGDPYFAGIASG
VMRAAAEQDLLVMLASTFREPAREIAYVSMLRAQRARAILLIGSGFQDRAWERAMDAELEPYVRAGGRVAVVSRHRSMRV
DTVQPENRAGAAALAASLVALGHRDFAVLSGPPELTTVADRLAGFREGLATAGIALERVVRGAFTREGGHMAARQLLASG
GRRPTCVFAVTDVMAVGALAALREAGVRVPEDMSLAGFDDIPVVREVSPPLTTVALPLTEMGEQVIALALRTPSGAGRSR
VLRIEGNVVLRGSTAAPPGS

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=664320 OG245_RS33770 WP_371628061.1 7693775..7694797(-) (cytR) [Streptomyces sp. NBC_01116]
GTGACGCTCGACGCGGTGGCGCGCGAGGCGGGCGTCTCGCTCGCCACCGCGTCCCGGGCGCTGAACGGCACCACCCGGGT
CCGCGACGATCTGCGCGAGCGGGTCCGCGCGGCGGCCGATCTCCTCGGCTACATCCCCAACGCCCACGCCCAGGCCCTCG
CCAGCCCCGAGGGCAACCGTACGGTCGGGCTGATCTGCCACGACGTCGGCGACCCCTACTTCGCCGGCATCGCCAGTGGG
GTGATGCGCGCCGCCGCCGAGCAGGACCTGCTGGTGATGCTGGCCTCCACCTTCCGCGAACCCGCCCGGGAGATCGCGTA
CGTCTCGATGCTGCGCGCCCAGCGGGCCCGGGCCATCCTGCTGATCGGCTCCGGTTTCCAGGACCGGGCCTGGGAACGCG
CGATGGACGCGGAGCTGGAGCCGTACGTCCGGGCGGGCGGGCGGGTCGCGGTGGTCAGCCGGCACCGGAGCATGCGGGTG
GACACCGTGCAGCCGGAGAACCGGGCCGGGGCGGCGGCGCTCGCGGCCTCGCTGGTGGCGCTGGGGCACCGGGACTTCGC
GGTGCTGAGCGGACCTCCCGAACTGACCACGGTGGCCGACCGGTTGGCGGGATTCCGCGAGGGTCTCGCCACGGCGGGCA
TCGCGCTGGAGCGGGTCGTGCGGGGCGCGTTCACGCGGGAGGGCGGACACATGGCGGCACGGCAGCTGCTGGCCTCCGGG
GGTCGGCGACCGACCTGTGTCTTCGCGGTGACCGACGTGATGGCCGTCGGCGCGCTCGCCGCGCTGCGGGAGGCCGGCGT
ACGCGTCCCCGAGGACATGTCGCTCGCGGGGTTCGACGACATCCCCGTCGTACGTGAGGTGTCACCGCCGCTGACCACGG
TGGCGCTGCCGCTCACGGAGATGGGCGAGCAGGTGATCGCCCTCGCCCTGCGGACGCCGTCGGGGGCGGGGCGCTCCCGG
GTGCTGCGGATCGAGGGGAACGTGGTCCTGCGGGGCAGCACCGCTGCGCCGCCCGGGAGTTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(2-47)

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.735

100

0.365