Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OG245_RS18550 Genome accession   NZ_CP108644
Coordinates   4262434..4263564 (-) Length   376 a.a.
NCBI ID   WP_371624623.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4257434..4268564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG245_RS18540 (OG245_18540) gyrB 4259200..4261269 (-) 2070 WP_371624622.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OG245_RS18545 (OG245_18545) - 4261718..4262221 (-) 504 WP_371627916.1 DUF721 domain-containing protein -
  OG245_RS18550 (OG245_18550) recF 4262434..4263564 (-) 1131 WP_371624623.1 DNA replication/repair protein RecF Machinery gene
  OG245_RS18555 (OG245_18555) gnd 4263631..4264515 (-) 885 WP_371624624.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  OG245_RS18560 (OG245_18560) dnaN 4264687..4265817 (-) 1131 WP_073799901.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40960.57 Da        Isoelectric Point: 6.3246

>NTDB_id=664286 OG245_RS18550 WP_371624623.1 4262434..4263564(-) (recF) [Streptomyces sp. NBC_01116]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVTQGERS
QLVELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYGDVAPGGGPVALEYRSSVGEDVG
PEHTRDELYEQLIAALEGVRKQEIERGVTLVGPHRDDLLLGLREMPAKGYASHGESWSYALALRLASYELLRSEGNEPVL
VLDDVFAELDARRRERLAELVAPGEQVLVTAAVAEDVPGVLAGARYAVTAGEVERV

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=664286 OG245_RS18550 WP_371624623.1 4262434..4263564(-) (recF) [Streptomyces sp. NBC_01116]
ATGCACGTCACCCATCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCTCTCGACCCGGGCGTCACCGC
GTTCGTGGGGCCCAACGGGCAGGGCAAGACCAACCTCGTCGAGGCCGTCGGCTATCTCGCCACCCTCGGCAGCCACCGGG
TCTCCTCGGACGCCCCGCTGGTGCGGATGGGCGCGGAGCGGGCGGTGATCCGTGCGGCGGTCACCCAGGGCGAGCGCTCC
CAGCTGGTCGAGCTGGAGCTGAATCCGGGCCGCGCCAACCGCGCCCGTATCAACCGGTCCTCGCAGGTCAGACCGCGTGA
CGTGCTCGGGATCGTACGGACCGTGCTGTTCGCGCCGGAGGATCTGGCCCTGGTCAAGGGCGACCCCGGGGAGCGGCGGC
GGTTCCTGGACGAGCTGATCACGGCGCGTTCGCCCCGGATGGCCGGGGTCCGCTCCGACTACGAGCGGGTGCTCAAGCAG
CGCAACACCCTGCTGAAGTCCGCGGCGATGGCCCGGCGGCACGGCGGCCGCTCGATGGACCTGTCGACGCTCGACGTCTG
GGACCAGCACCTGGGCCGGGTGGGCGCCGAACTGCTCGCGCAGCGCCTCGATCTGATCGCCACGCTCCAGCCGCTGGCCG
ACAAGGCGTACGGGGACGTCGCGCCGGGCGGCGGTCCGGTGGCGCTGGAGTACCGCAGCTCGGTCGGTGAGGACGTGGGC
CCCGAGCACACCCGCGACGAGCTGTACGAGCAGCTGATCGCGGCGCTCGAAGGGGTCCGCAAGCAGGAGATCGAGCGGGG
CGTGACCCTCGTCGGCCCGCACCGAGACGACCTGCTGCTCGGTCTGCGGGAGATGCCGGCGAAGGGGTACGCGAGTCACG
GCGAGTCCTGGAGCTACGCGCTGGCGCTGCGGCTGGCCAGTTACGAGCTGCTGCGCTCCGAGGGCAACGAGCCGGTGCTG
GTGCTGGACGACGTCTTCGCCGAGCTGGACGCCCGCCGCCGGGAGCGGCTGGCGGAGCTGGTGGCTCCGGGCGAGCAGGT
GCTCGTGACGGCCGCGGTGGCGGAGGACGTCCCGGGCGTGCTGGCGGGGGCGCGGTACGCGGTGACCGCGGGCGAGGTGG
AGCGCGTATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.808

97.074

0.367