Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   JCM16456_RS21050 Genome accession   NZ_AP014636
Coordinates   1295766..1296863 (-) Length   365 a.a.
NCBI ID   WP_404819184.1    Uniprot ID   -
Organism   Vibrio tritonius strain AM2     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1290766..1301863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCM16456_RS21035 - 1292125..1292493 (+) 369 WP_068718168.1 YgiW/YdeI family stress tolerance OB fold protein -
  JCM16456_RS21040 - 1292643..1293167 (+) 525 WP_068718170.1 hypothetical protein -
  JCM16456_RS21045 luxQ 1293190..1295751 (-) 2562 WP_068718172.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  JCM16456_RS21050 luxP 1295766..1296863 (-) 1098 WP_404819184.1 substrate-binding domain-containing protein Regulator
  JCM16456_RS21055 - 1297190..1298344 (-) 1155 WP_068718175.1 conjugal transfer protein TraF -
  JCM16456_RS21060 - 1298432..1298746 (-) 315 WP_068718176.1 GIY-YIG nuclease family protein -
  JCM16456_RS21065 - 1298743..1299402 (-) 660 WP_068718177.1 YceH family protein -
  JCM16456_RS21070 - 1299424..1299630 (-) 207 WP_068718179.1 hypothetical protein -
  JCM16456_RS21075 - 1299820..1300134 (+) 315 WP_068718181.1 DUF496 family protein -
  JCM16456_RS21080 - 1300521..1300745 (+) 225 WP_408068394.1 hypothetical protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41811.08 Da        Isoelectric Point: 9.4123

>NTDB_id=66425 JCM16456_RS21050 WP_404819184.1 1295766..1296863(-) (luxP) [Vibrio tritonius strain AM2]
MKRTITFCLLLMSVFPQLADASQVLKGYWHYREFLSHNPDQQMLTDKMVKTVRRDPVPLTIKQTRPITISVVFPGQQISD
YWVRNIKAFELRMQELGIVYQLNQVFTRPNVDARELSLSLMEAIKANSDYVIFTLDTTRHRKFIEHVLQSSKTKLILQNI
TTPVKAWDKRQPMMYVGFDHELGTARLFDYYQKLEPAGSEYSVLYYSEGYISAARGDTFIQSLQTLGRYRLASSYYTKAT
EASGYQATLNIVKNHPNIKFIYACSTDIALGAIKALKELKRQDIVVNGWGGGSAELNEIAKGDMEVTVMRMNDDTGVAMA
EAIKWDLEGKPVPTVYSGGFEVVTKNDSLDRVKRLEKWAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=66425 JCM16456_RS21050 WP_404819184.1 1295766..1296863(-) (luxP) [Vibrio tritonius strain AM2]
ATCAAACGCACCATTACCTTTTGTTTACTTCTTATGTCAGTGTTTCCTCAGCTTGCGGATGCATCCCAAGTGCTTAAAGG
TTATTGGCATTATCGTGAGTTTCTAAGCCACAATCCCGATCAGCAAATGTTGACTGATAAAATGGTGAAAACGGTACGTC
GCGATCCTGTCCCTCTCACTATAAAACAAACACGTCCAATCACCATTTCAGTGGTTTTCCCTGGGCAACAAATCTCGGAT
TATTGGGTTCGTAACATCAAAGCCTTTGAGCTACGAATGCAGGAATTGGGCATCGTGTATCAACTTAATCAGGTATTTAC
GCGTCCGAATGTGGATGCTAGAGAGTTGAGTTTGTCGCTAATGGAAGCGATAAAAGCCAATTCGGACTATGTGATTTTCA
CTCTTGATACCACACGTCATCGCAAATTTATCGAACATGTTTTGCAATCATCAAAAACCAAGTTGATTTTGCAAAACATT
ACCACGCCAGTTAAAGCGTGGGACAAGCGTCAGCCCATGATGTATGTCGGTTTCGACCACGAGCTTGGAACCGCAAGATT
ATTCGATTACTACCAAAAACTCGAACCTGCGGGCAGTGAATATTCAGTCTTATACTATTCTGAAGGTTATATCAGCGCCG
CTCGTGGCGATACGTTTATTCAATCATTGCAAACTTTAGGTCGCTATCGACTCGCATCGTCATACTACACCAAAGCCACT
GAAGCGAGTGGTTACCAAGCAACATTAAATATCGTAAAGAATCATCCTAACATTAAATTTATATACGCTTGTTCAACCGA
TATTGCTTTAGGAGCGATCAAGGCACTCAAGGAACTCAAACGCCAAGATATTGTTGTAAATGGCTGGGGCGGAGGTTCTG
CTGAGCTCAATGAAATTGCTAAAGGCGATATGGAGGTGACGGTAATGCGTATGAATGATGATACGGGTGTCGCGATGGCC
GAAGCGATCAAGTGGGACTTAGAAGGCAAGCCTGTTCCTACGGTTTATTCAGGTGGCTTTGAAGTCGTGACTAAGAACGA
CAGCCTTGATAGAGTTAAACGTCTAGAAAAATGGGCGTTTCGATATTCGGATCGCTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

67.671

100

0.677

Multiple sequence alignment