Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   MN187_RS07695 Genome accession   NZ_CP093384
Coordinates   1597179..1598993 (-) Length   604 a.a.
NCBI ID   WP_241699425.1    Uniprot ID   -
Organism   Vagococcus sp. CY52-2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1592179..1603993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN187_RS07670 (MN187_07670) - 1593356..1594240 (-) 885 WP_241699423.1 RluA family pseudouridine synthase -
  MN187_RS07675 (MN187_07675) - 1594237..1595055 (-) 819 WP_117973430.1 NAD kinase -
  MN187_RS07680 (MN187_07680) - 1595045..1595719 (-) 675 WP_147590036.1 GTP pyrophosphokinase family protein -
  MN187_RS07685 (MN187_07685) - 1595855..1596436 (+) 582 WP_117973247.1 CYTH domain-containing protein -
  MN187_RS07690 (MN187_07690) - 1596542..1597141 (+) 600 WP_117973248.1 DsbA family protein -
  MN187_RS07695 (MN187_07695) pepF 1597179..1598993 (-) 1815 WP_241699425.1 oligoendopeptidase F Regulator
  MN187_RS07700 (MN187_07700) - 1599018..1600163 (-) 1146 WP_242093745.1 competence protein CoiA -
  MN187_RS07705 (MN187_07705) queG 1600269..1601447 (+) 1179 WP_241699427.1 tRNA epoxyqueuosine(34) reductase QueG -
  MN187_RS07710 (MN187_07710) yjeM 1601607..1603106 (+) 1500 WP_242093747.1 glutamate/gamma-aminobutyrate family transporter YjeM -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69008.97 Da        Isoelectric Point: 4.7405

>NTDB_id=664227 MN187_RS07695 WP_241699425.1 1597179..1598993(-) (pepF) [Vagococcus sp. CY52-2]
MSETKQLPNRSELPEDLTWDLTPIFASDDAFNDALESLTSDLEKASEYQGTLKNGAKAFLSAIEYVLSIHRTTEKIYVYS
HLKNDQDTGNATYQGVYAKASTIAAKAGEAVSWFGPEVLTLSDETIEAYFKEESGLEIYRHFINQITADRAHTLSEKEEA
LLAGASEIFSASSHTFSILNNADLEFPIVTDEEGEKVQLSSGMYGQLMESTNREVRKEAFEGLYKVYKQFRNTFASTLSS
HVKKHNFNAQIRNYESAREASLSANHIPESVYDTLLDVVHKNLPLLHRYVALRKKLLNVSELHMYDMYTPILGDAPIRYT
YDEAKLKSLEGLSPLGEEYLEIVQEAYGDRWIDVVENKGKRSGAYSSGSYDTKPYILLNWHESLNHLFTLVHEMGHSVHS
YYTRKNQPYVYGDYSIFLAEIASTTNENLLTDYLLKTEKDPKVKAFILNHYLDGVKGTIFRQTQFAEFEHFIHTEDAKGT
PLTSDYLSEYYADLNAKYYGDSVERDPEIAYEWSRIPHFYYNYYVYQYATGFSAATALADKIIRKEDGALENYLTFLKSG
NSDYPIDVMKRAGVDMTQSAYIEETMKVFEARLNELETLIESFE

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=664227 MN187_RS07695 WP_241699425.1 1597179..1598993(-) (pepF) [Vagococcus sp. CY52-2]
ATGAGTGAAACAAAACAATTACCAAATCGTTCGGAACTACCAGAGGACTTAACATGGGACTTAACACCTATTTTTGCATC
AGATGATGCCTTTAACGATGCATTAGAGTCATTAACATCAGATTTAGAAAAAGCAAGCGAGTATCAAGGAACATTAAAAA
ATGGTGCAAAGGCTTTTCTATCAGCGATTGAATATGTATTATCTATTCATCGTACGACAGAAAAAATTTATGTGTACTCA
CATTTAAAAAATGATCAAGATACAGGCAATGCGACTTACCAAGGCGTGTATGCAAAAGCTAGCACGATTGCAGCTAAAGC
AGGGGAGGCTGTTTCATGGTTTGGTCCAGAAGTTTTAACATTATCAGATGAGACAATAGAGGCATATTTTAAAGAAGAAT
CTGGTTTAGAAATCTATCGTCATTTTATTAATCAAATTACGGCAGATAGAGCACACACCTTATCTGAAAAAGAAGAAGCG
TTACTAGCTGGGGCAAGTGAGATATTCTCAGCATCAAGTCATACTTTTTCTATACTAAATAATGCTGATTTAGAATTTCC
AATTGTAACAGATGAAGAAGGTGAAAAAGTTCAATTATCTTCAGGAATGTATGGTCAATTAATGGAAAGTACTAATCGCG
AAGTTCGTAAAGAAGCATTTGAAGGATTGTACAAAGTATATAAACAATTTAGAAACACGTTTGCAAGCACGTTATCTTCC
CACGTGAAAAAACATAATTTTAACGCACAGATTAGAAATTATGAATCTGCTAGAGAAGCTTCTTTAAGTGCTAATCATAT
TCCAGAATCAGTCTATGATACATTGTTAGATGTGGTACATAAAAATTTACCATTATTACATCGTTATGTTGCATTGCGCA
AAAAATTATTAAATGTTAGTGAGTTGCATATGTATGATATGTATACACCAATATTAGGTGATGCACCAATTCGTTACACT
TATGACGAGGCAAAATTAAAATCACTTGAAGGGTTGTCTCCATTAGGTGAAGAATACTTAGAAATCGTTCAAGAAGCGTA
TGGTGACCGTTGGATTGATGTGGTTGAAAACAAAGGTAAACGCAGTGGGGCATATTCTTCAGGAAGTTATGACACAAAAC
CTTATATCTTATTAAATTGGCATGAAAGTTTAAATCATTTATTTACGCTAGTTCATGAAATGGGACATAGTGTTCATAGT
TACTATACAAGAAAAAATCAGCCTTATGTGTATGGCGATTATTCCATCTTTTTAGCAGAAATTGCCTCAACAACTAATGA
AAACTTACTAACAGATTATTTGTTAAAAACAGAAAAAGATCCGAAAGTTAAGGCCTTTATTTTAAATCATTACTTGGATG
GTGTAAAAGGCACAATCTTTAGACAAACGCAATTTGCTGAATTTGAACATTTTATTCACACAGAAGATGCGAAGGGAACA
CCATTAACAAGTGATTATTTAAGTGAGTACTATGCTGATTTAAATGCGAAATACTATGGTGATTCGGTAGAGCGCGATCC
AGAAATCGCGTATGAATGGAGTCGTATTCCTCATTTCTACTATAATTATTATGTGTATCAATACGCAACAGGTTTTTCTG
CTGCAACTGCTTTAGCAGATAAAATCATTCGTAAAGAAGATGGGGCTTTGGAAAATTACTTAACTTTCTTGAAATCAGGA
AATAGTGACTACCCTATTGATGTCATGAAACGCGCTGGTGTTGATATGACACAATCAGCTTATATTGAAGAAACGATGAA
AGTATTTGAAGCGCGTCTTAATGAATTAGAAACATTAATTGAGTCATTTGAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.637

98.179

0.536