Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG368_RS25830 Genome accession   NZ_CP108643
Coordinates   5830372..5832105 (-) Length   577 a.a.
NCBI ID   WP_102931589.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01124     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5825372..5837105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG368_RS25815 (OG368_25795) - 5826323..5826976 (-) 654 WP_315978443.1 hypothetical protein -
  OG368_RS25820 (OG368_25800) - 5827128..5828329 (+) 1202 Protein_5096 RNA polymerase sigma factor -
  OG368_RS25825 (OG368_25805) rcrQ 5828444..5830372 (-) 1929 WP_134654976.1 ABC transporter ATP-binding protein Regulator
  OG368_RS25830 (OG368_25810) rcrP 5830372..5832105 (-) 1734 WP_102931589.1 ABC transporter ATP-binding protein Regulator
  OG368_RS25835 (OG368_25815) - 5832261..5833709 (-) 1449 WP_102931588.1 FGGY-family carbohydrate kinase -
  OG368_RS25840 (OG368_25820) - 5833758..5834063 (-) 306 WP_164712967.1 YtxH domain-containing protein -
  OG368_RS25860 (OG368_25840) - 5834683..5834835 (-) 153 WP_164712968.1 hypothetical protein -
  OG368_RS25865 (OG368_25845) - 5834903..5836321 (-) 1419 WP_125631858.1 GAF domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62540.75 Da        Isoelectric Point: 6.1941

>NTDB_id=664221 OG368_RS25830 WP_102931589.1 5830372..5832105(-) (rcrP) [Streptomyces sp. NBC_01124]
MLIRLLRTYLRPYKKPIALLVALQFLQTCASLYLPTLNADIIDNGVVEGDSGYILSYGALMIGISLAQVVCNIGAVFYGA
RTAAALGRDVRGAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMSFTLMVSAPIMCVGGIVMALGLDVPLSGV
LLGVVPVLAICVTLIVRKLRPLFRKMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRKANTELTEVSLGTGNLLAL
MFPVVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTESSVVP
PVAPVTELRRHGHLEIREAGFRYPGAEEPVLRNIGLVAKPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVNGVDVR
TVDPKTLAKVVSLVPQKPYLFAGTVATNLRYGNPDATDEELWHALAVAQAKEFVSELEGGLDAPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAQETAEATVVIVAQRVATIRDADRIVVLDEGRVVGVGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=664221 OG368_RS25830 WP_102931589.1 5830372..5832105(-) (rcrP) [Streptomyces sp. NBC_01124]
GTGCTCATACGACTACTGCGGACCTATCTCAGGCCGTACAAGAAACCCATCGCCCTGCTGGTGGCGCTGCAGTTCCTGCA
GACCTGCGCCTCCCTCTACCTGCCGACCCTGAACGCGGACATCATCGACAACGGTGTCGTGGAAGGTGACTCGGGCTACA
TCCTGAGCTACGGCGCCCTGATGATCGGCATCTCGCTGGCCCAGGTGGTCTGCAACATCGGTGCCGTCTTCTACGGCGCG
CGCACCGCCGCCGCGCTCGGCCGGGACGTGCGCGGTGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCGCGCGAGGTGGG
CCACTTCGGCGCGCCCTCGCTGATCACGCGGACCACCAACGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGTCGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGATGGCGCTCGGCCTGGACGTGCCGCTGTCCGGGGTA
CTGCTCGGGGTCGTGCCGGTGCTGGCGATCTGCGTCACGCTGATCGTGCGGAAGCTGCGCCCGCTGTTCCGCAAGATGCA
GGTGCGCCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTGCGCGACG
AGTACGAGCAGCAGCGTTTCCGGAAGGCCAACACCGAGCTGACCGAGGTGTCCCTCGGCACCGGCAACCTGCTGGCGCTG
ATGTTCCCGGTGGTCATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTCTGGTTCGGCGCCCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGGCACCGAGAGCAGTGTGGTGCCG
CCGGTGGCGCCGGTCACCGAGCTGCGCCGGCACGGGCACCTGGAGATCCGGGAGGCGGGCTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTCAGGAACATCGGCCTGGTGGCCAAACCGGGCGAGACGACCGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCGACGCTGCTGGGCCTGGTCCCCCGGCTCTTCGACGCCACCGACGGGGAGGTCCTGGTCAACGGCGTGGACGTGCGC
ACCGTCGACCCGAAGACGCTGGCCAAGGTGGTGAGCCTGGTGCCGCAGAAGCCGTACCTCTTCGCCGGCACCGTCGCGAC
CAACCTGCGGTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGCGGTGGCGCAGGCCAAGGAGTTCG
TCTCCGAGCTGGAGGGCGGGCTCGACGCGCCGATCTCCCAGGGCGGCACCAACGTGTCCGGCGGTCAGCGCCAGCGGCTC
GCCATCGCGCGGACGCTGGTCCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCGGCGCTGCGGGCCGCGCTGGCCCAGGAGACCGCCGAGGCGACGGTGGTCATCGTGGCGCAGCGGGTGGCGACCATCC
GGGACGCGGACCGGATCGTCGTGCTGGACGAGGGGCGGGTGGTCGGCGTGGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.076

97.574

0.381