Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG368_RS25825 Genome accession   NZ_CP108643
Coordinates   5828444..5830372 (-) Length   642 a.a.
NCBI ID   WP_134654976.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01124     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5823444..5835372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG368_RS25810 (OG368_25790) - 5825325..5826326 (-) 1002 WP_315978444.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG368_RS25815 (OG368_25795) - 5826323..5826976 (-) 654 WP_315978443.1 hypothetical protein -
  OG368_RS25820 (OG368_25800) - 5827128..5828329 (+) 1202 Protein_5096 RNA polymerase sigma factor -
  OG368_RS25825 (OG368_25805) rcrQ 5828444..5830372 (-) 1929 WP_134654976.1 ABC transporter ATP-binding protein Regulator
  OG368_RS25830 (OG368_25810) rcrP 5830372..5832105 (-) 1734 WP_102931589.1 ABC transporter ATP-binding protein Regulator
  OG368_RS25835 (OG368_25815) - 5832261..5833709 (-) 1449 WP_102931588.1 FGGY-family carbohydrate kinase -
  OG368_RS25840 (OG368_25820) - 5833758..5834063 (-) 306 WP_164712967.1 YtxH domain-containing protein -
  OG368_RS25860 (OG368_25840) - 5834683..5834835 (-) 153 WP_164712968.1 hypothetical protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69567.85 Da        Isoelectric Point: 5.5586

>NTDB_id=664220 OG368_RS25825 WP_134654976.1 5828444..5830372(-) (rcrQ) [Streptomyces sp. NBC_01124]
MAGPAGRMMAGGGPDQRSMDFKGSSKRLVAQFRPERATLFTLLACVVVSVGLNVVGPKILGRATDLVFAGIVGRDMPSGA
TKEQVLDSMREHGDGNVADMLRSTDFTPGQGIDFGAVGEVLLLALATFAVAGLLMAVATRLVNRTVNRTMFRLREHVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIQQTLQQSMGQLINSLLTIIGVLAMMFYVSWILALVALVTVPLSFVVATRVGK
RSQPQFVQQWRSTGALNAHIEEMYTGHALVKVFGRQEESAKQFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGQLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQSADPIPGTRPEDLRGRVELE
HVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIAKMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMEDGAIVEQGAHAELLAADGAYARLYKAQFAEAVAE
VG

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=664220 OG368_RS25825 WP_134654976.1 5828444..5830372(-) (rcrQ) [Streptomyces sp. NBC_01124]
ATGGCCGGGCCTGCGGGTCGCATGATGGCCGGGGGCGGCCCCGACCAGCGTTCGATGGACTTCAAGGGGTCGAGCAAACG
GCTCGTCGCCCAGTTCCGGCCGGAGCGGGCGACGCTCTTCACGCTGCTGGCCTGCGTGGTCGTCAGCGTCGGCCTCAACG
TGGTCGGGCCGAAGATCCTCGGCCGGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGGCGGGACATGCCGTCCGGGGCC
ACGAAGGAGCAGGTCCTGGACTCCATGCGCGAGCACGGTGACGGCAACGTCGCCGACATGCTCCGCAGCACGGACTTCAC
CCCGGGCCAGGGCATCGACTTCGGCGCGGTGGGCGAGGTGCTGCTCCTGGCACTGGCGACCTTCGCGGTGGCCGGGCTGC
TGATGGCGGTGGCGACGCGGCTGGTCAACCGCACGGTCAACCGGACGATGTTCCGGCTGCGCGAGCACGTGCAGACGAAG
CTGTCCCGGCTGCCGCTGTCCTACTTCGACAAGCGCCAGCGCGGCGAGGTGCTGAGCCGGGCGACCAACGACATCGACAA
CATCCAGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACCATCATCGGCGTGCTGGCGATGATGT
TCTACGTCTCCTGGATCCTGGCGCTGGTCGCCCTGGTGACCGTGCCGCTGTCCTTCGTGGTGGCCACGCGGGTGGGCAAG
CGGTCGCAGCCGCAGTTCGTGCAGCAGTGGCGCTCGACGGGCGCGCTGAACGCGCACATCGAGGAGATGTACACCGGGCA
CGCGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGAAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCCAACCTGAACTACGTGCTGGTCGCG
GTGGTCGGCGGGCTGCGGGTGGCCTCGGGCCAGCTGTCCATCGGCGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTGGCGTCGGCGGAGCGGATCTTCGAGC
TCCTGGACGCCGAGGAGCAGTCGGCGGACCCGATCCCGGGCACCCGCCCCGAGGACCTGCGCGGGCGGGTGGAGCTGGAG
CACGTCTCCTTCCGCTACGACCCGGAGAAGCCGCTGATCGAGGACCTGTCGCTGAAGGTGGAGCCGGGCCACACGGTCGC
CATCGTCGGCCCGACGGGCGCGGGCAAGACGACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACCGGCGGGCGGA
TCACCCTGGACGGCGTCGACATCGCGAAGATGTCCCGGGACGAGCTGCGGGCCGGCATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGGGCCTCGCGGGAGGTCACCCGCGGGGAGATCGAGGAGGC
CGCGCGGGCCGCGCACGCCGACCGGTTCGTACGGACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGCACGG
GGGTGAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTCGTGCTGGACGAG
GCGACGTCGTCGGTGGACACGCGGACGGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGGACGTCGTT
CGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATTCTGGTCATGGAGGACGGGGCGATCGTGGAGCAGG
GGGCGCACGCGGAGCTGCTGGCGGCGGATGGTGCGTACGCACGGCTCTACAAGGCTCAGTTCGCGGAGGCTGTGGCTGAG
GTGGGGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(40-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.894

97.04

0.407