Detailed information NTG0664211

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OG368_RS22190
• Genome accession: NZ_CP108643
• Coordinates: 4986927..4987925 (+)
• Length: 332 a.a.
• NCBI ID: WP_030190975.1
• Uniprot ID: A0A6B3QQG4
• Organism: Streptomyces sp. NBC_01124
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4981927..4992925

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG368_RS22165 (OG368_22140)	-	4982189..4982842 (+)	654	WP_125630880.1	TetR/AcrR family transcriptional regulator	-
OG368_RS22170 (OG368_22145)	-	4983085..4984632 (+)	1548	WP_102929045.1	MFS transporter	-
OG368_RS22175 (OG368_22150)	-	4984741..4985232 (-)	492	WP_102929031.1	MarR family winged helix-turn-helix transcriptional regulator	-
OG368_RS22180 (OG368_22155)	-	4985354..4986115 (+)	762	WP_102929030.1	dioxygenase	-
OG368_RS22185 (OG368_22160)	-	4986196..4986714 (-)	519	WP_125630882.1	GNAT family N-acetyltransferase	-
OG368_RS22190 (OG368_22165)	rpoS	4986927..4987925 (+)	999	WP_030190975.1	RNA polymerase sigma factor RpoD/SigA	Regulator
OG368_RS22195 (OG368_22170)	-	4988569..4989177 (+)	609	WP_232250534.1	TetR/AcrR family transcriptional regulator	-
OG368_RS22200 (OG368_22175)	-	4989214..4990185 (-)	972	WP_176154974.1	YafY family protein	-
OG368_RS22205 (OG368_22180)	-	4990249..4991856 (+)	1608	WP_176154976.1	MFS transporter	-
OG368_RS22210 (OG368_22185)	-	4992044..4992805 (+)	762	WP_102929025.1	DeoR/GlpR family DNA-binding transcription regulator	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37154.81 Da
• Isoelectric Point: 4.9068

>NTDB_id=664211 OG368_RS22190 WP_030190975.1 4986927..4987925(+) (rpoS) [Streptomyces sp. NBC_01124]
MATRAVARRKSATGETSGSATSVRANGGELADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLEGYEETGAD
ATREELQALIDEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAEIAAELGSTPERVTDVLDWARDPVSLNMSVDDEGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFEAAA

Nucleotide

• Length: 999 bp

>NTDB_id=664211 OG368_RS22190 WP_030190975.1 4986927..4987925(+) (rpoS) [Streptomyces sp. NBC_01124]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACCTCCGGCTCGGCAACCAGCGTCCGCGCGAACGG
CGGCGAGCTCGCCGACCGCGATCTGGTCGGCATGTACCTCGACGAGATCGCCCGGACACCGCTGCTCGACGCCGCCAAGG
AGGTCGAGCTGTCCCAGACCATCGAGGCGGGTGTGTTCGCGCGGCAGGTCCTCGAAGGGTACGAGGAGACCGGGGCGGAC
GCCACCCGTGAGGAACTCCAGGCCCTGATCGACGAGGGCGAGCGGGCGAAGGACGTCTTCATCCGCTCCAACCTCCGCCT
GGTCGTCGCGGTGGCCCGCCGCTACCCGCGCAGCGGTCTGCCGCTCCTCGACCTGATCCAGGAGGGCAACGCCGGCCTGG
TCCGCGCCGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGGTCCATCGCCGACCAGTCGCGCACCATCCGGCTGCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGGCGTGT
GCAGCGCGAGTTCAACCGCGAGCACGGCCGCGAGCCGGAGCCCGCCGAGATCGCGGCCGAGCTGGGCTCCACGCCGGAGC
GCGTCACCGACGTGCTCGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGAGGGCGAGACCCAGTTC
GGCGACCTGTTGGAGGACACCTCCGCCGTGTCGCCCGAGCAGTCGGTGCTGACCCTGCTGCGCAGCGAGGAGCTGGACGA
CCTCATCGGCCGGCTCGACCCGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGCACGC
TGACCGAGGTCGGCAAGGAGCACGGCCTCACGCGTGAGCGCATCCGCCAGATCGAGAAGCACGCGCTGCTGGAGCTGAAG
AAGCTGGCCCGCGACACCGGCTTCGAGGCGGCCGCGTAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (269-321)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

• Sigma-70 region 3 (Sigma70_r3) (179-255)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (34-67)

3D structure

• AlphaFold DB: A0A6B3QQG4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.468	90.06	0.364