Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MMG00_RS02835 Genome accession   NZ_CP093379
Coordinates   624247..625197 (+) Length   316 a.a.
NCBI ID   WP_242151115.1    Uniprot ID   -
Organism   Ignatzschineria rhizosphaerae strain HR5S32     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 619247..630197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMG00_RS02825 (MMG00_02825) - 620541..622163 (+) 1623 WP_242151109.1 N-acetylmuramoyl-L-alanine amidase -
  MMG00_RS02830 (MMG00_02830) - 622440..623927 (+) 1488 WP_242151112.1 aldehyde dehydrogenase family protein -
  MMG00_RS02835 (MMG00_02835) ceuB 624247..625197 (+) 951 WP_242151115.1 ABC transporter permease Machinery gene
  MMG00_RS02840 (MMG00_02840) - 625194..626138 (+) 945 WP_242151118.1 iron chelate uptake ABC transporter family permease subunit -
  MMG00_RS02845 (MMG00_02845) - 626138..626896 (+) 759 WP_242151121.1 ATP-binding cassette domain-containing protein -
  MMG00_RS02850 (MMG00_02850) - 627224..628210 (+) 987 WP_242151124.1 siderophore ABC transporter substrate-binding protein -
  MMG00_RS02855 (MMG00_02855) - 628498..629706 (-) 1209 WP_242151128.1 argininosuccinate synthase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34576.08 Da        Isoelectric Point: 9.9757

>NTDB_id=664187 MMG00_RS02835 WP_242151115.1 624247..625197(+) (ceuB) [Ignatzschineria rhizosphaerae strain HR5S32]
MRIRYWVLILLVLSVISLFVGVINISVNDLFNLTDAQKQTILISRIPRLITILIAGASLSISGLIMQKLSQNPFVSPTTA
GTMESARLGILIAILLFAGASPIIKMALAFIFALLGTFIFMKILHHIRYKDAIFVPLIGLMFGGIIGSISTFIAYKYDLI
QNLSSWLIGDFSMVMSGRYELIYISIPLMIVAYLYAHQFSIAGMGQDFAKNLGLKYKQIMNIGLAIVAMITASVILTVGM
IPFLGLIVPNIVSLYMGDNIRTTLPYTAILGAIVVLVCDVVGRLVIYPYEIPISVMIGIIGSAIFIWLLFKKAAAA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=664187 MMG00_RS02835 WP_242151115.1 624247..625197(+) (ceuB) [Ignatzschineria rhizosphaerae strain HR5S32]
ATGAGAATACGATATTGGGTTCTCATTCTCTTAGTATTATCTGTGATTTCCCTTTTTGTGGGAGTCATTAATATTTCAGT
GAATGACCTCTTTAATTTAACTGATGCGCAAAAACAGACGATTCTGATTAGTCGCATTCCAAGATTGATTACAATTTTAA
TTGCCGGCGCAAGTCTCTCTATTAGTGGCTTGATTATGCAAAAATTAAGTCAAAATCCTTTTGTGTCACCCACGACAGCA
GGAACGATGGAGTCCGCTCGGTTAGGGATTTTAATTGCGATCTTATTATTTGCCGGTGCTTCACCCATTATTAAAATGGC
ATTAGCATTTATCTTTGCGCTACTTGGCACGTTTATTTTTATGAAGATATTGCATCATATTCGTTATAAAGATGCGATAT
TTGTCCCCTTGATAGGTTTAATGTTCGGGGGGATTATTGGTTCTATCTCTACCTTTATCGCTTATAAATACGATTTAATT
CAAAACTTATCATCTTGGTTAATTGGTGATTTCTCAATGGTAATGTCAGGGCGATATGAGTTAATTTATATCTCAATCCC
TTTAATGATAGTGGCTTATCTTTATGCTCACCAATTCTCTATTGCGGGAATGGGGCAAGATTTTGCTAAGAATCTAGGAC
TTAAATATAAGCAAATTATGAATATTGGTTTGGCAATTGTCGCAATGATTACGGCATCTGTTATTTTAACAGTGGGAATG
ATCCCCTTTTTAGGACTCATTGTGCCTAATATTGTCTCGCTTTATATGGGGGATAATATTCGTACGACACTGCCTTATAC
AGCTATTTTGGGTGCGATTGTGGTTTTAGTTTGTGATGTTGTTGGGCGTCTTGTGATTTATCCTTATGAGATTCCTATTA
GTGTGATGATTGGAATTATTGGTAGTGCAATTTTTATCTGGTTGCTCTTTAAAAAGGCGGCAGCTGCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

56.013

100

0.56