Detailed information NTG0664186

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: MMG00_RS01830
• Genome accession: NZ_CP093379
• Coordinates: 414552..415910 (-)
• Length: 452 a.a.
• NCBI ID: WP_242150569.1
• Uniprot ID: -
• Organism: Ignatzschineria rhizosphaerae strain HR5S32
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 409552..420910

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MMG00_RS01815 (MMG00_01815)	-	410411..412216 (-)	1806	WP_242150561.1	TPM domain-containing protein	-
MMG00_RS01820 (MMG00_01820)	-	412307..412906 (-)	600	WP_242150564.1	LemA family protein	-
MMG00_RS01825 (MMG00_01825)	-	413102..414322 (-)	1221	WP_242150566.1	sugar transporter	-
MMG00_RS01830 (MMG00_01830)	radA	414552..415910 (-)	1359	WP_242150569.1	DNA repair protein RadA	Machinery gene
MMG00_RS01835 (MMG00_01835)	-	416074..417360 (-)	1287	WP_242150572.1	MFS transporter	-
MMG00_RS01845 (MMG00_01845)	-	418856..419800 (-)	945	WP_242150577.1	hypothetical protein	-
MMG00_RS01850 (MMG00_01850)	trxA	420043..420366 (-)	324	WP_242150580.1	thioredoxin	-

Sequence

Protein

• Length: 452 a.a.
• Molecular weight: 49001.53 Da
• Isoelectric Point: 6.5058

>NTDB_id=664186 MMG00_RS01830 WP_242150569.1 414552..415910(-) (radA) [Ignatzschineria rhizosphaerae strain HR5S32]
MSKEKKQFVCRDCGAVAQKWAGQCLDCKAWNSIEEMIVEKTPTRLSGYSGTAGTDGVQILTDVQKEELSRFSTGLNELDR
VLGGGLVFGSVVLIGGDPGIGKSTILLQTLIHLSHSGKNVLYVTGEESPSQVALRAERLQLDGSKLQLLSETNVEKILRV
AEPMDLDVIVIDSIQTIFTELLNSAPGNVGQVRESTALLTRFAKRTGTSIFLAGHVTKEGAIAGPRVLEHMVDCVLYFEG
EVDSRFRIMRSYKNRFGPLHEIGVFAMTGTGLRPISNPSAIFLSRQPERSSGSVIMVTREGTRPLLIEIQSLVDDSLGGQ
PRRVTLGLEQNRLTMLLAVLHRHAGIAMMDQDVYVNAVGGVKVTETASDLAVIAAAFSSFRDTILPADLVIFGEIGLAGE
VRPVPHGEERLKEAAKHGFTRAIIPIANKPKNDIPGMEIIGVAKINELMDHL

Nucleotide

• Length: 1359 bp

>NTDB_id=664186 MMG00_RS01830 WP_242150569.1 414552..415910(-) (radA) [Ignatzschineria rhizosphaerae strain HR5S32]
ATGAGTAAAGAGAAAAAACAATTTGTCTGCCGTGATTGCGGCGCTGTCGCACAAAAGTGGGCTGGACAATGTTTAGATTG
TAAAGCTTGGAACTCTATTGAAGAGATGATCGTTGAAAAAACACCGACACGCCTTTCCGGATACTCAGGAACAGCCGGCA
CCGATGGCGTACAGATTCTTACCGATGTCCAAAAAGAGGAGCTATCTCGCTTTTCTACAGGTCTTAATGAACTAGACCGC
GTATTAGGCGGTGGCTTAGTCTTTGGATCTGTTGTTTTAATCGGGGGAGATCCTGGCATTGGAAAATCTACCATTTTGCT
TCAAACATTAATTCACCTAAGTCATTCAGGTAAAAATGTCCTTTATGTCACAGGGGAAGAATCCCCAAGCCAAGTGGCAC
TTCGCGCTGAACGGTTACAACTTGATGGCTCTAAACTACAATTACTATCAGAAACTAATGTCGAAAAAATTCTACGGGTT
GCAGAGCCGATGGATCTTGATGTCATCGTCATTGACTCTATTCAGACAATTTTTACAGAGCTCCTTAATTCAGCCCCAGG
AAATGTAGGGCAAGTACGTGAAAGTACTGCGCTTTTAACACGATTTGCTAAACGCACCGGCACCTCCATTTTCTTAGCAG
GTCACGTGACAAAAGAAGGTGCTATAGCAGGACCTCGCGTCTTAGAACATATGGTCGATTGCGTACTCTACTTTGAAGGC
GAAGTCGATTCTCGCTTTAGAATCATGCGCTCTTATAAAAACCGCTTTGGGCCCCTTCATGAAATTGGTGTTTTTGCCAT
GACCGGAACCGGTTTAAGACCAATTAGTAATCCTTCTGCAATTTTCCTCTCAAGACAACCCGAAAGAAGCTCTGGCAGTG
TCATTATGGTTACAAGAGAAGGAACACGCCCGCTTCTAATCGAGATTCAATCCTTAGTTGATGATTCTCTTGGCGGACAG
CCTCGCCGCGTGACTTTAGGATTAGAGCAAAACAGGTTAACCATGTTGCTTGCCGTTCTCCACCGGCATGCGGGCATTGC
GATGATGGATCAAGATGTCTATGTTAATGCCGTGGGCGGTGTTAAAGTTACCGAAACAGCCTCAGATCTCGCCGTTATCG
CAGCCGCCTTCTCTAGTTTTAGAGATACGATATTGCCGGCAGATTTGGTGATTTTTGGAGAGATAGGCTTAGCCGGAGAA
GTTCGCCCTGTACCACACGGGGAGGAGCGCCTAAAGGAAGCTGCAAAACATGGCTTTACAAGAGCCATTATTCCGATTGC
CAATAAACCTAAAAATGATATTCCTGGCATGGAAATTATTGGGGTTGCCAAAATTAACGAACTGATGGATCACCTATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (69-220)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.672	100	0.502
radA	Streptococcus mitis SK321	46.035	100	0.462
radA	Streptococcus mitis NCTC 12261	45.197	100	0.458
radA	Streptococcus pneumoniae Rx1	45.197	100	0.458
radA	Streptococcus pneumoniae D39	45.197	100	0.458
radA	Streptococcus pneumoniae R6	45.197	100	0.458
radA	Streptococcus pneumoniae TIGR4	45.197	100	0.458