Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   JCM16456_RS14455 Genome accession   NZ_AP014635
Coordinates   3248657..3249472 (+) Length   271 a.a.
NCBI ID   WP_331710504.1    Uniprot ID   -
Organism   Vibrio tritonius strain AM2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3243657..3254472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCM16456_RS14440 - 3244878..3247199 (+) 2322 WP_068715536.1 Tex family protein -
  JCM16456_RS14445 - 3247312..3247782 (-) 471 WP_068715539.1 ATP-dependent Lon protease -
  JCM16456_RS14450 bioH 3247907..3248680 (-) 774 WP_068715540.1 pimeloyl-ACP methyl ester esterase BioH -
  JCM16456_RS14455 comF 3248657..3249472 (+) 816 WP_331710504.1 phosphoribosyltransferase family protein Machinery gene
  JCM16456_RS14460 nfuA 3249567..3250154 (+) 588 WP_068715544.1 Fe-S biogenesis protein NfuA -
  JCM16456_RS14465 nudE 3250275..3250856 (+) 582 WP_068715546.1 ADP compounds hydrolase NudE -
  JCM16456_RS14470 cysQ 3250861..3251688 (+) 828 WP_068715548.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  JCM16456_RS14475 - 3251739..3252491 (-) 753 WP_068715550.1 type II secretion system protein N -
  JCM16456_RS14480 - 3252493..3253002 (-) 510 WP_068715552.1 type II secretion system protein M -
  JCM16456_RS14485 gspL 3253015..3254229 (-) 1215 WP_068715554.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 30920.19 Da        Isoelectric Point: 8.8377

>NTDB_id=66418 JCM16456_RS14455 WP_331710504.1 3248657..3249472(+) (comF) [Vibrio tritonius strain AM2]
MPVQLSAHSQTLLLFSTLASQQEKHNQTHCLALVIAMVSNWRQKTIRSLTPALCHLCRLALAPTDQHYFCHACLAQFPLM
PRCKTCGLITTKPVDMCGRCLKKPPIWHSLTCIGDYHYPLSQLTHQFKYQRAFWLAPPLVQLLAEHIVEPAPVIAAVPLH
WRRYLWRGFNQSDLLAQQLSQKIGCEYWPSLFHRIRATPHQQGLSRRQRLTNLQGVFNLTSLPYPVDHIAIIDDVVTTGS
TVKQLCRLLLDVGVQRVDIYCLCRTPEPSDS

Nucleotide


Download         Length: 816 bp        

>NTDB_id=66418 JCM16456_RS14455 WP_331710504.1 3248657..3249472(+) (comF) [Vibrio tritonius strain AM2]
TTGCCAGTACAACTCAGTGCTCATTCACAAACTCTCCTACTTTTTTCCACCTTAGCCAGCCAACAAGAAAAGCATAATCA
AACCCATTGTCTTGCACTGGTCATTGCTATGGTATCGAATTGGCGACAAAAAACCATCCGCTCACTCACTCCTGCATTAT
GCCATTTGTGCCGCTTAGCGTTAGCACCAACCGATCAACACTATTTTTGTCATGCTTGTTTGGCACAATTTCCCCTCATG
CCGCGCTGCAAGACCTGTGGGCTGATAACGACAAAGCCAGTGGACATGTGCGGCCGTTGTCTAAAAAAGCCGCCAATTTG
GCACTCTTTAACTTGTATTGGTGATTATCACTATCCTTTGAGCCAGCTTACCCATCAATTCAAATATCAACGCGCGTTTT
GGTTAGCCCCGCCACTGGTGCAGTTGCTTGCCGAACACATTGTAGAGCCAGCTCCTGTGATTGCGGCGGTACCTCTACAT
TGGCGTCGTTACCTGTGGCGCGGGTTCAACCAAAGCGATCTACTTGCGCAGCAACTGAGTCAAAAAATAGGGTGCGAATA
CTGGCCTAGCCTATTTCATCGCATTCGTGCCACACCGCATCAGCAAGGGCTATCTCGTCGTCAAAGACTCACCAACTTAC
AGGGTGTATTTAATTTAACATCACTACCTTATCCTGTTGATCATATTGCAATTATTGATGACGTAGTGACAACAGGAAGT
ACAGTAAAACAATTGTGTCGCTTATTACTTGATGTTGGCGTACAAAGAGTGGATATTTACTGCTTATGTCGTACTCCTGA
ACCGTCCGATTCTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(212-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.962

87.454

0.498
  comF Vibrio campbellii strain DS40M4

42.917

88.561

0.38

Multiple sequence alignment